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Protein
Submitted name:

SRY-box 17

Gene

SOX17

Organism
Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi68 – 136HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SRY-box 17Imported
Gene namesi
Name:SOX17Imported
OrganismiPongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)Imported
Taxonomic identifieri9601 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePongo
Proteomesi
  • UP000001595 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9601.ENSPPYP00000020852.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 136HMG boxInterPro annotationAdd BLAST69
Domaini280 – 415Sox C-terminalInterPro annotationAdd BLAST136

Phylogenomic databases

eggNOGiENOG410KD20. Eukaryota.
ENOG41114B8. LUCA.
GeneTreeiENSGT00760000118988.
InParanoidiH2PQB5.
KOiK04495.
OMAiHMGGHYR.
OrthoDBiEOG091G0CYU.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR036910. HMG_box_dom_sf.
IPR033392. Sox7/17/18_central.
IPR021934. Sox_C.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
PF12067. Sox17_18_mid. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.

Sequencei

Sequence statusi: Complete.

H2PQB5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPDAGYAS DDQSQTRSAL PAVMAGLGPC PWAESLSPIG DMKVKGEAPA
60 70 80 90 100
SSGAPAGAAG RAKGESRIRR PMNAFMVWAK DERKRLAQQN PDLHNAELSK
110 120 130 140 150
MLGKSWKALT LAEKRPFVEE AERLRVQHMQ DHPNYKYRPR RRKQVKRLKR
160 170 180 190 200
VEGGFLHGLA EPQAAALGPE GGRVAMDGLG LQFPEQGFPA GPPLLPPHMG
210 220 230 240 250
GHYRDCQSLG APPLDGYPLP TPDTSPLDGV DPDPAFFAAP MPGDCPAAGT
260 270 280 290 300
YSYAQVSDYA GPPEPPAGPM HPRLGPEPAG PSIPGLLAPP SALHMYYGAM
310 320 330 340 350
GSPGAGGGRG FQMQPQHQHQ HQHQHQHHPP GPGQPSPPPE ALPCRDGTEP
360 370 380 390 400
SQPAELLGEV DRTEFEQYLH FVCKPEMGLP YQGHDSGVNL PDSHGAISSV
410
VSDASSAVYY CNYPDV
Length:416
Mass (Da):44,429
Last modified:March 21, 2012 - v1
Checksum:i6B5467CEB88312F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABGA01196102 Genomic DNA. No translation available.
RefSeqiXP_002819131.1. XM_002819085.2.

Genome annotation databases

EnsembliENSPPYT00000021685; ENSPPYP00000020852; ENSPPYG00000018593.
GeneIDi100443758.
KEGGipon:100443758.

Similar proteinsi

Entry informationi

Entry nameiH2PQB5_PONAB
AccessioniPrimary (citable) accession number: H2PQB5
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: January 31, 2018
This is version 37 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported