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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

SHJG_7610

Organism
Streptomyces hygroscopicus subsp. jinggangensis (strain 5008)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSHYG1133850:GLLU-7678-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:SHJG_7610Imported
OrganismiStreptomyces hygroscopicus subsp. jinggangensis (strain 5008)Imported
Taxonomic identifieri1133850 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000007170: Chromosome

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H2JQM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLPVMPPVK PMLAKSVAKI PPGMHYEAKW DGFRSIVFRD GAEVELGSRT
60 70 80 90 100
GKPLTRYFPE LVEALKERLP ERCVLDGEIV IARGGRLDFD ALTERIHPAA
110 120 130 140 150
SRVRMLAEKT PASFVAFDVL ALDDHALLDV PLTDRRALLD RALAGATPPV
160 170 180 190 200
HVAPSTTDIE VARQWFEQFE GAGLDGVVAK PLTLRYLQDE RAMFKIKHER
210 220 230 240 250
TADVVVAGYR FHKSGPVVGS LLLGLYDEQG RLQHVGVSAA FSMKKRAELV
260 270 280 290 300
EELEPLRMDD VSGHPWAAWT DETAHETARL PGAPSRWSGK KDLSWVPLRP
310 320 330 340 350
DRVAEVAYDH MENGQRFRHT ARFRRWRPDR TPESCTYAQL QEPVRYDLAE

ILGEKDGG
Length:358
Mass (Da):40,186
Last modified:March 21, 2012 - v1
Checksum:i3CAC96BE827FDF53
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003275 Genomic DNA. Translation: AEY92877.1.
RefSeqiYP_006248750.1. NC_017765.1.

Genome annotation databases

EnsemblBacteriaiAEY92877; AEY92877; SHJG_7610.
GeneIDi12811753.
KEGGishy:SHJG_7610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003275 Genomic DNA. Translation: AEY92877.1.
RefSeqiYP_006248750.1. NC_017765.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEY92877; AEY92877; SHJG_7610.
GeneIDi12811753.
KEGGishy:SHJG_7610.

Enzyme and pathway databases

BioCyciSHYG1133850:GLLU-7678-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomic analysis of Streptomyces hygroscopicus subsp. jinggangensis 5008."
    Wu H., Bai L.
    Submitted (JAN-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 5008Imported.

Entry informationi

Entry nameiH2JQM3_STRHJ
AccessioniPrimary (citable) accession number: H2JQM3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: March 4, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.