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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Clo1100_0394

Organism
Clostridium sp. BNL1100
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciCSP755731:GJVM-394-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
ORF Names:Clo1100_0394Imported
OrganismiClostridium sp. BNL1100Imported
Taxonomic identifieri755731 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
ProteomesiUP000007324: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

H2JI29-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAAVTDIIKV EIENRVIDIK NPDKLFWPEA GVTKLEFVKT MTKLAPFLIK
60 70 80 90 100
YSKNRMLTSI RYPHGINDKS FFQKEKPQGT PEWVETVEFN QKNYIALNSA
110 120 130 140 150
ATLVWLCTQA ALELHTSFNV HEKPNHPSSL VFDLDPDDDL HFEDVAELAD
160 170 180 190 200
RIHETLEALG IKGFIKTSGA TGLQIFVPTA SKFDYDTARS LNEFFAQYFA
210 220 230 240 250
EKLISTVTIE RMKKKRDGKI YFDWQQMWIG KSMITAYSAR AVKSAAVSAP
260 270 280 290 300
IEWSELNSIR PEMFTLKNIV NRLEQKGDIF EPSLKLDNSP QLNEILKQID

TAR
Length:303
Mass (Da):34,669
Last modified:March 21, 2012 - v1
Checksum:i1205F2C65A08F141
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003259 Genomic DNA. Translation: AEY64680.1.
RefSeqiWP_014312082.1. NC_016791.1.
YP_005146485.1. NC_016791.1.

Genome annotation databases

EnsemblBacteriaiAEY64680; AEY64680; Clo1100_0394.
GeneIDi11722468.
KEGGiclb:Clo1100_0394.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003259 Genomic DNA. Translation: AEY64680.1.
RefSeqiWP_014312082.1. NC_016791.1.
YP_005146485.1. NC_016791.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEY64680; AEY64680; Clo1100_0394.
GeneIDi11722468.
KEGGiclb:Clo1100_0394.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciCSP755731:GJVM-394-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Clostridium sp. Strain BNL1100, a Cellulolytic Mesophile Isolated from Corn Stover."
    Li L.L., Taghavi S., Izquierdo J.A., van der Lelie D.
    J. Bacteriol. 194:6982-6983(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BNL1100Imported.

Entry informationi

Entry nameiH2JI29_9CLOT
AccessioniPrimary (citable) accession number: H2JI29
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: January 7, 2015
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.