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Protein
Submitted name:

ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family protein

Gene

Clo1100_0393

Organism
Clostridium sp. BNL1100
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCSP755731:GJVM-393-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family proteinImported
Gene namesi
ORF Names:Clo1100_0393Imported
OrganismiClostridium sp. BNL1100Imported
Taxonomic identifieri755731 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
ProteomesiUP000007324 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi755731.Clo1100_0393.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H2JI28-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNWIIPMEPV ICPDVKEGSG CIHEIKWDGI RGMVYIQDGN VKIYTKKGKE
60 70 80 90 100
RTGFYPELDV LRKGLGGKNA ILDGEFVVLD EDGVPSFYKS LIRERVRNSG
110 120 130 140 150
KLQYYTSSYP VCYMVFDILQ YGDDILVNMP LIERKQILEE NLSSLTGNDT
160 170 180 190 200
KIFLAKMYKD GKELFEKMKK QNMEGIVSKK TDSLYIGGKK HDAWFKTKFI
210 220 230 240 250
KKMLCIVGGI QWKSIHPNSL VLGIKPPDSE KLVYVGKASI GLKQSDLMLI
260 270 280 290 300
KEYSGQLEQE ECPFTTDEII QLDKTGEKFT WLYPALTCWI SFLELTNDGH
310 320
LRHPKIEGFA VLPVEEADGK VLTD
Length:324
Mass (Da):36,913
Last modified:March 21, 2012 - v1
Checksum:i2C6E22850EE546D2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003259 Genomic DNA. Translation: AEY64679.1.
RefSeqiWP_014312081.1. NC_016791.1.

Genome annotation databases

EnsemblBacteriaiAEY64679; AEY64679; Clo1100_0393.
KEGGiclb:Clo1100_0393.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003259 Genomic DNA. Translation: AEY64679.1.
RefSeqiWP_014312081.1. NC_016791.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi755731.Clo1100_0393.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEY64679; AEY64679; Clo1100_0393.
KEGGiclb:Clo1100_0393.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciCSP755731:GJVM-393-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Clostridium sp. Strain BNL1100, a Cellulolytic Mesophile Isolated from Corn Stover."
    Li L.L., Taghavi S., Izquierdo J.A., van der Lelie D.
    J. Bacteriol. 194:6982-6983(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BNL1100Imported.

Entry informationi

Entry nameiH2JI28_9CLOT
AccessioniPrimary (citable) accession number: H2JI28
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: July 22, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.