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Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Vibrio sp. (strain EJY3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: InterPro
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciVSP1116375:GJV8-4800-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
Name:malSImported
ORF Names:VEJY3_23691Imported
OrganismiVibrio sp. (strain EJY3)Imported
Taxonomic identifieri1116375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000006799 Componenti: Chromosome 2

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

H2IMV7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLNLITTTL LLASASAIAE PNITISTTTN SRDFPLSAEQ PLVVPLTKDG
60 70 80 90 100
YTLKITGIDG SCTAPDGQNV KFNTPISLNC GEPTELALKI RFTGDYSFAY
110 120 130 140 150
DEQAKTLLFK REPKKAAKTE FKRPIPKVQC EVYQGGEVSI ALGDSFPDGT
160 170 180 190 200
KLRDAYSGQV VEVKNQQVSL VPDQASGGIV LLEPMKKTKQ AIPFNYRNAN
210 220 230 240 250
IYFVMVDRFN NADSSNDASY GRKKDGKEEI GTFHGGDLKG VIDKLDYIKS
260 270 280 290 300
LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGSE
310 320 330 340 350
ADLKTLVEEA HKRGLKVLMD AVINHTGYST LADLQFDGIE VLKPGADLPE
360 370 380 390 400
KWANWQPKSG ENWHSYHHYI DYQSPNWANW WGGDWVRAGL PGYPEPGSSD
410 420 430 440 450
ITMSLAGLPD FVTESDKAVT PPKWLLDNPG TRVKARDNFT VSDYLIEWQT
460 470 480 490 500
DWVKRFGIDG YRVDTVKHVE GDVWKRLKQE ASQSLEQWRK ENGRSGQPFW
510 520 530 540 550
MMGEVWGHTA YRSPYFDDGF DALINFDMQK KLDKGAACFS QMAETYQSYA
560 570 580 590 600
DTIANEKDFN PVSYMSSHDT ELFFSRFKDY AMQRNAANAL LLSPGAVQVY
610 620 630 640 650
YGDEVGRNIG PYADDFHQGT RSDMVWKLTD EKQSLLKHWQ TLGQFRKAHP
660 670 680
AIGAGKHHVI AQEGAYVFSR TLAGDKVVVA FVGREKP
Length:687
Mass (Da):76,922
Last modified:March 21, 2012 - v1
Checksum:iCDF9CDE10F43237E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003242 Genomic DNA. Translation: AEX25147.1.
RefSeqiWP_014234983.1. NC_016614.1.
YP_005026122.1. NC_016614.1.

Genome annotation databases

EnsemblBacteriaiAEX25147; AEX25147; VEJY3_23691.
KEGGivej:VEJY3_23691.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003242 Genomic DNA. Translation: AEX25147.1.
RefSeqiWP_014234983.1. NC_016614.1.
YP_005026122.1. NC_016614.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEX25147; AEX25147; VEJY3_23691.
KEGGivej:VEJY3_23691.

Phylogenomic databases

KOiK01176.

Enzyme and pathway databases

BioCyciVSP1116375:GJV8-4800-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source."
    Roh H., Yun E.J., Lee S., Ko H.J., Kim S., Kim B.Y., Song H., Lim K.I., Kim K.H., Choi I.G.
    J. Bacteriol. 194:2773-2774(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EJY3Imported.

Entry informationi

Entry nameiH2IMV7_VIBSJ
AccessioniPrimary (citable) accession number: H2IMV7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: April 1, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.