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H2IC24

- H2IC24_9VIBR

UniProt

H2IC24 - H2IC24_9VIBR

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Protein
Submitted name:

DNA ligase

Gene

VEJY3_07070

Organism
Vibrio sp. EJY3
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVSP1116375:GJV8-1456-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:VEJY3_07070Imported
OrganismiVibrio sp. EJY3Imported
Taxonomic identifieri1116375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000006799: Chromosome 1

Structurei

3D structure databases

ProteinModelPortaliH2IC24.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H2IC24-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPIKMTLIAL AIMASTHVQA HPTVAPLVSL AETYQDGIDV SQYWYSEKLD
60 70 80 90 100
GIRAYWTGQH LVTRNGNRIH APKWFTAPLP DYPLDGELWA GRGNFHLVQQ
110 120 130 140 150
TVLDKTPVDS AWKKVDFMLF DMPYSAGDYR KRYYNIQNLV YELDEPHIKY
160 170 180 190 200
VEHMTIQDEE HLFSQLDKIA LADGEGVMLR KVSSRYQAGR GSDLLKLKRF
210 220 230 240 250
ADTEAQVIGH KPGTGRLLGM MGAILVRMPD GTEFYIGSGF TDELRRNPPQ
260 270 280
LGSIITFRYN GFTHNGKPKF ARFLRERSKE
Length:280
Mass (Da):31,984
Last modified:March 21, 2012 - v1
Checksum:i7F8F2BE6B6F81D9B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003241 Genomic DNA. Translation: AEX21904.1.
RefSeqiWP_014231782.1. NC_016613.1.
YP_005022882.1. NC_016613.1.

Genome annotation databases

EnsemblBacteriaiAEX21904; AEX21904; VEJY3_07070.
GeneIDi11665824.
KEGGivej:VEJY3_07070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003241 Genomic DNA. Translation: AEX21904.1 .
RefSeqi WP_014231782.1. NC_016613.1.
YP_005022882.1. NC_016613.1.

3D structure databases

ProteinModelPortali H2IC24.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEX21904 ; AEX21904 ; VEJY3_07070 .
GeneIDi 11665824.
KEGGi vej:VEJY3_07070.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci VSP1116375:GJV8-1456-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome Sequence of Vibrio sp. Strain EJY3, an Agarolytic Marine Bacterium Metabolizing 3,6-Anhydro-L-Galactose as a Sole Carbon Source."
    Roh H., Yun E.J., Lee S., Ko H.J., Kim S., Kim B.Y., Song H., Lim K.I., Kim K.H., Choi I.G.
    J. Bacteriol. 194:2773-2774(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EJY3Imported.

Entry informationi

Entry nameiH2IC24_9VIBR
AccessioniPrimary (citable) accession number: H2IC24
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3