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H2IC24 (H2IC24_9VIBR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AEX21904.1
Gene names
ORF Names:VEJY3_07070 EMBL AEX21904.1
OrganismVibrio sp. EJY3 [Complete proteome] EMBL AEX21904.1
Taxonomic identifier1116375 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEX21904.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
H2IC24 [UniParc].

Last modified March 21, 2012. Version 1.
Checksum: 7F8F2BE6B6F81D9B

FASTA28031,984
        10         20         30         40         50         60 
MPIKMTLIAL AIMASTHVQA HPTVAPLVSL AETYQDGIDV SQYWYSEKLD GIRAYWTGQH 

        70         80         90        100        110        120 
LVTRNGNRIH APKWFTAPLP DYPLDGELWA GRGNFHLVQQ TVLDKTPVDS AWKKVDFMLF 

       130        140        150        160        170        180 
DMPYSAGDYR KRYYNIQNLV YELDEPHIKY VEHMTIQDEE HLFSQLDKIA LADGEGVMLR 

       190        200        210        220        230        240 
KVSSRYQAGR GSDLLKLKRF ADTEAQVIGH KPGTGRLLGM MGAILVRMPD GTEFYIGSGF 

       250        260        270        280 
TDELRRNPPQ LGSIITFRYN GFTHNGKPKF ARFLRERSKE 

« Hide

References

[1]"Genome Sequence of Vibrio sp. Strain EJY3, an Agarolytic Marine Bacterium Metabolizing 3,6-Anhydro-L-Galactose as a Sole Carbon Source."
Roh H., Yun E.J., Lee S., Ko H.J., Kim S., Kim B.Y., Song H., Lim K.I., Kim K.H., Choi I.G.
J. Bacteriol. 194:2773-2774(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: EJY3 EMBL AEX21904.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003241 Genomic DNA. Translation: AEX21904.1.
RefSeqYP_005022882.1. NC_016613.1.

3D structure databases

ProteinModelPortalH2IC24.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEX21904; AEX21904; VEJY3_07070.
GeneID11665824.
KEGGvej:VEJY3_07070.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycVSP1116375:GJV8-1456-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH2IC24_9VIBR
AccessionPrimary (citable) accession number: H2IC24
Entry history
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: June 11, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)