Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase

Gene

VEJY3_07070

Organism
Vibrio sp. (strain EJY3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciVSP1116375:GJV8-1456-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:VEJY3_07070Imported
OrganismiVibrio sp. (strain EJY3)Imported
Taxonomic identifieri1116375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000006799 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi1116375.VEJY3_07070.

Structurei

3D structure databases

ProteinModelPortaliH2IC24.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

H2IC24-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPIKMTLIAL AIMASTHVQA HPTVAPLVSL AETYQDGIDV SQYWYSEKLD
60 70 80 90 100
GIRAYWTGQH LVTRNGNRIH APKWFTAPLP DYPLDGELWA GRGNFHLVQQ
110 120 130 140 150
TVLDKTPVDS AWKKVDFMLF DMPYSAGDYR KRYYNIQNLV YELDEPHIKY
160 170 180 190 200
VEHMTIQDEE HLFSQLDKIA LADGEGVMLR KVSSRYQAGR GSDLLKLKRF
210 220 230 240 250
ADTEAQVIGH KPGTGRLLGM MGAILVRMPD GTEFYIGSGF TDELRRNPPQ
260 270 280
LGSIITFRYN GFTHNGKPKF ARFLRERSKE
Length:280
Mass (Da):31,984
Last modified:March 21, 2012 - v1
Checksum:i7F8F2BE6B6F81D9B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003241 Genomic DNA. Translation: AEX21904.1.
RefSeqiWP_014231782.1. NC_016613.1.
YP_005022882.1. NC_016613.1.

Genome annotation databases

EnsemblBacteriaiAEX21904; AEX21904; VEJY3_07070.
KEGGivej:VEJY3_07070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003241 Genomic DNA. Translation: AEX21904.1.
RefSeqiWP_014231782.1. NC_016613.1.
YP_005022882.1. NC_016613.1.

3D structure databases

ProteinModelPortaliH2IC24.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1116375.VEJY3_07070.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEX21904; AEX21904; VEJY3_07070.
KEGGivej:VEJY3_07070.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciVSP1116375:GJV8-1456-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source."
    Roh H., Yun E.J., Lee S., Ko H.J., Kim S., Kim B.Y., Song H., Lim K.I., Kim K.H., Choi I.G.
    J. Bacteriol. 194:2773-2774(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EJY3Imported.

Entry informationi

Entry nameiH2IC24_VIBSJ
AccessioniPrimary (citable) accession number: H2IC24
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: June 24, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.