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H2IC24

- H2IC24_9VIBR

UniProt

H2IC24 - H2IC24_9VIBR

Protein
Submitted name:

DNA ligase

Gene

VEJY3_07070

Organism
Vibrio sp. EJY3
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (21 Mar 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciVSP1116375:GJV8-1456-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    ORF Names:VEJY3_07070Imported
    OrganismiVibrio sp. EJY3Imported
    Taxonomic identifieri1116375 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000006799: Chromosome 1

    Structurei

    3D structure databases

    ProteinModelPortaliH2IC24.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H2IC24-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPIKMTLIAL AIMASTHVQA HPTVAPLVSL AETYQDGIDV SQYWYSEKLD    50
    GIRAYWTGQH LVTRNGNRIH APKWFTAPLP DYPLDGELWA GRGNFHLVQQ 100
    TVLDKTPVDS AWKKVDFMLF DMPYSAGDYR KRYYNIQNLV YELDEPHIKY 150
    VEHMTIQDEE HLFSQLDKIA LADGEGVMLR KVSSRYQAGR GSDLLKLKRF 200
    ADTEAQVIGH KPGTGRLLGM MGAILVRMPD GTEFYIGSGF TDELRRNPPQ 250
    LGSIITFRYN GFTHNGKPKF ARFLRERSKE 280
    Length:280
    Mass (Da):31,984
    Last modified:March 21, 2012 - v1
    Checksum:i7F8F2BE6B6F81D9B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003241 Genomic DNA. Translation: AEX21904.1.
    RefSeqiWP_014231782.1. NC_016613.1.
    YP_005022882.1. NC_016613.1.

    Genome annotation databases

    EnsemblBacteriaiAEX21904; AEX21904; VEJY3_07070.
    GeneIDi11665824.
    KEGGivej:VEJY3_07070.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003241 Genomic DNA. Translation: AEX21904.1 .
    RefSeqi WP_014231782.1. NC_016613.1.
    YP_005022882.1. NC_016613.1.

    3D structure databases

    ProteinModelPortali H2IC24.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEX21904 ; AEX21904 ; VEJY3_07070 .
    GeneIDi 11665824.
    KEGGi vej:VEJY3_07070.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci VSP1116375:GJV8-1456-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Vibrio sp. Strain EJY3, an Agarolytic Marine Bacterium Metabolizing 3,6-Anhydro-L-Galactose as a Sole Carbon Source."
      Roh H., Yun E.J., Lee S., Ko H.J., Kim S., Kim B.Y., Song H., Lim K.I., Kim K.H., Choi I.G.
      J. Bacteriol. 194:2773-2774(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: EJY3Imported.

    Entry informationi

    Entry nameiH2IC24_9VIBR
    AccessioniPrimary (citable) accession number: H2IC24
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 21, 2012
    Last sequence update: March 21, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3