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Protein
Submitted name:

Glutamate decarboxylase eukaryotic type

Gene

VEJY3_05975

Organism
Vibrio sp. (strain EJY3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciVSP1116375:GJV8-1239-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Glutamate decarboxylase eukaryotic typeImported
Gene namesi
ORF Names:VEJY3_05975Imported
OrganismiVibrio sp. (strain EJY3)Imported
Taxonomic identifieri1116375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000006799 Componenti: Chromosome 1

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

H2IA85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKEQKTADV SFESLLKIFT VPEGPDSTLT KIEEGLSRNL NQFLREHIVA
60 70 80 90 100
EEKPLREIEK DFSSAQIPEQ PEFVSDHTEH LLDTLVSHSV HTSAPSFIGH
110 120 130 140 150
MTSALPYFLM PLSKIMIALN QNLVKIETSK AFTPLERQVL GMLHRLIYAQ
160 170 180 190 200
PNTFYDQWMH SANHSLGAFC SGGTIANITA LWVARNKALK ADGEFKGVEK
210 220 230 240 250
EGLFKAMKHY GYEGLAIMVS ERGHYSLKKA ADVLGLGQEG LVAVKTDANN
260 270 280 290 300
RIIVDDLKAK ISELKKQNIK PIAVIGVAGT TETGNVDPLA SIAEVCQEHD
310 320 330 340 350
CHFHVDAAWG GATLMSNHHR HLLNGIELAD SVTIDAHKQL YIPMGAGMVL
360 370 380 390 400
FKDPDAMKSI EHHAQYILRK GSKDLGSHTL EGSRSGMAML VYAAMHIISR
410 420 430 440 450
PGYELLIDQS IEKARYFADL IKKQDDFELV SEPELCLLTY RYLPPNIREA
460 470 480 490 500
LEKADGTQKE ELNELINELT QFIQKRQRET GKSFVSRTTL NPEHWERMST
510 520 530 540
IVFRVVLANP LTSTDIFDAV LDEQRLIAQQ APNLNAKIQE LASKILAS
Length:548
Mass (Da):61,198
Last modified:March 21, 2012 - v1
Checksum:i24950F6C741E04B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003241 Genomic DNA. Translation: AEX21689.1.
RefSeqiWP_014231570.1. NC_016613.1.
YP_005022667.1. NC_016613.1.

Genome annotation databases

EnsemblBacteriaiAEX21689; AEX21689; VEJY3_05975.
KEGGivej:VEJY3_05975.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003241 Genomic DNA. Translation: AEX21689.1.
RefSeqiWP_014231570.1. NC_016613.1.
YP_005022667.1. NC_016613.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEX21689; AEX21689; VEJY3_05975.
KEGGivej:VEJY3_05975.

Phylogenomic databases

KOiK01580.

Enzyme and pathway databases

BioCyciVSP1116375:GJV8-1239-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source."
    Roh H., Yun E.J., Lee S., Ko H.J., Kim S., Kim B.Y., Song H., Lim K.I., Kim K.H., Choi I.G.
    J. Bacteriol. 194:2773-2774(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EJY3Imported.

Entry informationi

Entry nameiH2IA85_VIBSJ
AccessioniPrimary (citable) accession number: H2IA85
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: April 29, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.