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Protein
Submitted name:

DNA ligase

Gene

GU3_12250

Organism
Oceanimonas sp. (strain GK1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciOSP511062:GI6E-2539-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:GU3_12250Imported
OrganismiOceanimonas sp. (strain GK1)Imported
Taxonomic identifieri511062 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAeromonadalesAeromonadaceaeOceanimonas
ProteomesiUP000007742 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi511062.GU3_12250.

Structurei

3D structure databases

ProteinModelPortaliH2FX73.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

H2FX73-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPLPLVLPL LWLGVPAPAD AEAPPLQLAA DYAPHHNPAD YLVSEKLDGV
60 70 80 90 100
RAYWNGRQLV SRGGHAFSAP DWFVAGFPAT PLDGELWLGR GRFAELSAAV
110 120 130 140 150
RRFEPVEDEW REIRFMVFDL PASELPFAAR VAALERLAGT LTTPYLQRVQ
160 170 180 190 200
HHALADAAAL AARLDEVESE GGEGLMLRHR QSRYVPERNQ DLLKLKRFQD
210 220 230 240 250
AEARVLAQLP GQGRLEGMMG ALLVETVDGR RFKLGTGFSD EQRRHPPAPG
260 270
TLVTYRYRGE TATGLPRFAS FWRVRDETP
Length:279
Mass (Da):31,123
Last modified:March 21, 2012 - v1
Checksum:iA720FF3B5A5990D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003171 Genomic DNA. Translation: AEY02205.1.
RefSeqiWP_014292916.1. NC_016745.1.
YP_005092955.1. NC_016745.1.

Genome annotation databases

EnsemblBacteriaiAEY02205; AEY02205; GU3_12250.
KEGGioce:GU3_12250.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003171 Genomic DNA. Translation: AEY02205.1.
RefSeqiWP_014292916.1. NC_016745.1.
YP_005092955.1. NC_016745.1.

3D structure databases

ProteinModelPortaliH2FX73.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi511062.GU3_12250.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEY02205; AEY02205; GU3_12250.
KEGGioce:GU3_12250.

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Enzyme and pathway databases

BioCyciOSP511062:GI6E-2539-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Oceanimonas sp. GK1, a halotolerant bacterium from Gavkhouni Wetland in Iran."
    Parsa Yeganeh L., Azarbaijani R., Sarikhan S., Mousavi H., Ramezani M., Amoozegar M.A., Shahzadeh Fazeli A., Salekdeh G.H.
    J. Bacteriol. 194:2123-2124(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GK1Imported.

Entry informationi

Entry nameiH2FX73_OCESG
AccessioniPrimary (citable) accession number: H2FX73
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: June 24, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.