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H2AHS9

- H2AHS9_BACAM

UniProt

H2AHS9 - H2AHS9_BACAM

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Bacillus amyloliquefaciens subsp. plantarum CAU B946
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (21 Mar 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBAMY1114958:GJW0-1386-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    ORF Names:BACAU_1295Imported
    OrganismiBacillus amyloliquefaciens subsp. plantarum CAU B946Imported
    Taxonomic identifieri1114958 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000008361: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    H2AHS9-1 [UniParc]FASTAAdd to Basket

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    MQPILTSVPP EGSEWRYEVK YDGFRCLLRI DENGVTLTSR NGQTLTNQFP    50
    EITAFAARCF QHMKDRFPIT LDGELVYLIN PYRADFEHLQ IRGRLKRTEA 100
    IKSTAERRPC RFLAFDLLVL EGAGTVSLPY VKRKRALSNL LKEANLPVCP 150
    HHLAEEAIQY IPEHTDFDAL WDKVVRYDGE GIVAKRASSG WAENKRSPDW 200
    QKYKHMKTAH VLLTGFNPKN GYVTASVLKD GIVVPIASVS HGMQAEEKNA 250
    VRTIMETHGK KQKSGEYTLE PSICMTVQYL TILQDTLREV SFVSFQFEMD 300
    WTECTYQQLI LRSKTLPPKL QFTSLDKIVF KKREKTKADF LSYMVKMSDF 350
    LMPFLKDRAV TVIRYPHGAP GESFFQKNKP DYTPDFVSSV FDGSHEHIVC 400
    SSIPSLLWLA NQLALEFHVP FQTVHSERPA EIVIDLDPPS RNDFPMAVEA 450
    AHVLKQLFDS FSMTSFPKLS GNKGIQLYIP LSPEAFTYEE TRAFTMLIAD 500
    YCVRTRPDLF TTERFIKNRN GRLYLDYLQH AEGKTIIAPY STRGNELGTV 550
    AAPLYWSEVN SSLTPDDYTI DTVVNRVRTE GDPFYDFYRN PQDGPLSIVL 600
    EQIKRKS 607
    Length:607
    Mass (Da):69,529
    Last modified:March 21, 2012 - v1
    Checksum:i2942ADA1466D5EBE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE617159 Genomic DNA. Translation: CCF04829.1.
    RefSeqiYP_005130024.1. NC_016784.1.

    Genome annotation databases

    EnsemblBacteriaiCCF04829; CCF04829; BACAU_1295.
    GeneIDi11698460.
    KEGGibaq:BACAU_1295.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE617159 Genomic DNA. Translation: CCF04829.1 .
    RefSeqi YP_005130024.1. NC_016784.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CCF04829 ; CCF04829 ; BACAU_1295 .
    GeneIDi 11698460.
    KEGGi baq:BACAU_1295.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci BAMY1114958:GJW0-1386-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Complete Genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 Contains a Gene Cluster for Nonribosomal Synthesis of Iturin A."
      Blom J., Rueckert C., Niu B., Wang Q., Borriss R.
      J. Bacteriol. 194:1845-1846(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CAU B946Imported.

    Entry informationi

    Entry nameiH2AHS9_BACAM
    AccessioniPrimary (citable) accession number: H2AHS9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 21, 2012
    Last sequence update: March 21, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3