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H2A405 (H2A405_STRMD) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 9. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
tRNA binding domain protein EMBL CCF01407.1
Gene names
Name:ytpR EMBL CCF01407.1
Ordered Locus Names:SMA_0116 EMBL CCF01407.1
OrganismStreptococcus macedonicus (strain ACA-DC 198) [Complete proteome] [HAMAP] EMBL CCF01407.1
Taxonomic identifier1116231 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Lactobacillales › Streptococcaceae › Streptococcus ›

Protein attributes

Sequence length208 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 tRNA-binding domain. SAAS SAAS002547

Ontologies

Keywords
   LigandRNA-binding
tRNA-binding SAAS SAAS002547
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functiontRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
H2A405 [UniParc].

Last modified March 21, 2012. Version 1.
Checksum: D10B89CB7D324C63

FASTA20822,519
        10         20         30         40         50         60 
MIFTYNKEHV GDVLMVIVKD SKGAKLDYER KGNVSRVFLE KNGETVAWNI FEVSSLVTIE 

        70         80         90        100        110        120 
GVGQVTLSDQ DVATLNAELA KEGFAEQLEN DPSPKFVVGQ IKEMVAHPDS DHLNICQVQI 

       130        140        150        160        170        180 
SDDKTVQIVA GAPNATVGLK TIVALPGAMM PNGSLIFPGA LRGEKSFGMM CSPRELALPN 

       190        200 
APQKRGIIEL DDTAVVGEAF NPEKHWKG

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References

[1]"Complete genome sequence of the dairy isolate Streptococcus macedonicus ACA-DC 198."
Papadimitriou K., Ferreira S., Papandreou N.C., Mavrogonatou E., Supply P., Pot B., Tsakalidou E.
J. Bacteriol. 194:1838-1839(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ACA-DC 198 EMBL CCF01407.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		HE613569 Genomic DNA. Translation: CCF01407.1.
RefSeqYP_005093849.1. NC_016749.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCF01407; CCF01407; SMA_0116.
GeneID11600467.
KEGGsmn:SMA_0116.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK06878.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012340. NA-bd_OB-fold.
IPR002547. tRNA-bd_dom.
[Graphical view]
PfamPF01588. tRNA_bind. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
PROSITEPS50886. TRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH2A405_STRMD
AccessionPrimary (citable) accession number: H2A405
Entry history
Integrated into UniProtKB/TrEMBL: March 21, 2012
Last sequence update: March 21, 2012
Last modified: April 3, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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