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Protein
Submitted name:

Macrophage scavenger receptor types I and II

Gene

MSR1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. scavenger receptor activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Macrophage scavenger receptor types I and IIImported
Gene namesi
Name:MSR1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 8

Organism-specific databases

HGNCiHGNC:7376. MSR1.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiH0YBY2.
ExpressionAtlasiH0YBY2. baseline and differential.

Interactioni

Structurei

3D structure databases

ProteinModelPortaliH0YBY2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119251.

Family and domain databases

InterProiIPR008160. Collagen.
IPR003543. Macro_scav_rcpt.
[Graphical view]
PfamiPF01391. Collagen. 1 hit.
[Graphical view]
PRINTSiPR01408. MACSCAVRCPTR.

Sequencei

Sequence statusi: Fragment.

H0YBY2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
EISKLEERVY NVSAEIMAMK EEQVHLEQEI KGEVKVLNNI TNDLRLKDWE
60 70 80 90 100
HSQTLRNITL IQGPPGPPGE KGDRGPTGES GPRGFPGPIG PPGLKGDRGA
110 120 130 140
IGFPGSRGLP GYAGRPGNSG PKGQKGEKGS GNTLKSRNLT TRKVFAISK
Length:149
Mass (Da):15,920
Last modified:February 22, 2012 - v1
Checksum:i4F4E610ABAE2BAE2
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010785 Genomic DNA. No translation available.
AC023396 Genomic DNA. No translation available.
AC087360 Genomic DNA. No translation available.
AC091162 Genomic DNA. No translation available.
AC145059 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000522672; ENSP00000430536; ENSG00000038945.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010785 Genomic DNA. No translation available.
AC023396 Genomic DNA. No translation available.
AC087360 Genomic DNA. No translation available.
AC091162 Genomic DNA. No translation available.
AC145059 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliH0YBY2.
ModBaseiSearch...
MobiDBiSearch...

Chemistry

BindingDBiH0YBY2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000522672; ENSP00000430536; ENSG00000038945.

Organism-specific databases

HGNCiHGNC:7376. MSR1.
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00760000119251.

Miscellaneous databases

NextBioi35521561.

Gene expression databases

BgeeiH0YBY2.
ExpressionAtlasiH0YBY2. baseline and differential.

Family and domain databases

InterProiIPR008160. Collagen.
IPR003543. Macro_scav_rcpt.
[Graphical view]
PfamiPF01391. Collagen. 1 hit.
[Graphical view]
PRINTSiPR01408. MACSCAVRCPTR.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "DNA sequence and analysis of human chromosome 8."
    Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S., Garber M., Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Allen N.R., Anderson S., Asakawa T.
    , Blechschmidt K., Bloom T., Borowsky M.L., Butler J., Cook A., Corum B., DeArellano K., DeCaprio D., Dooley K.T., Dorris L. III, Engels R., Glockner G., Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K., Jaffe D.B., Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P., Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H., Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C., O'Leary S.B., O'Neill K., Parker S.C., Polley A., Raymond C.K., Reichwald K., Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R., Smith C.L., Sneddon T.P., Talamas J.A., Tenzin P., Topham K., Venkataraman V., Wen G., Yamazaki S., Young S.K., Zeng Q., Zimmer A.R., Rosenthal A., Birren B.W., Platzer M., Shimizu N., Lander E.S.
    Nature 439:331-335(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (DEC-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiH0YBY2_HUMAN
AccessioniPrimary (citable) accession number: H0YBY2
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: March 4, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationPeptideAtlas annotation, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.