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Protein
Submitted name:

Syndetin

Gene

VPS50

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
SyndetinImported
Gene namesi
Name:VPS50Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 7

Organism-specific databases

EuPathDBiHostDB:ENSG00000004766.15.
HGNCiHGNC:25956. VPS50.

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000004766.

PTM / Processingi

Proteomic databases

MaxQBiH0Y7Q2.
PaxDbiH0Y7Q2.
PeptideAtlasiH0Y7Q2.
PRIDEiH0Y7Q2.

Expressioni

Gene expression databases

BgeeiENSG00000004766.
ExpressionAtlasiH0Y7Q2. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliH0Y7Q2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 132Vps54_NInterPro annotationAdd BLAST131

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili3 – 30Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2939. Eukaryota.
ENOG410XS88. LUCA.
GeneTreeiENSGT00390000003442.

Family and domain databases

InterProiView protein in InterPro
IPR019515. VPS54_N.
PfamiView protein in Pfam
PF10475. Vps54_N. 1 hit.

Sequencei

Sequence statusi: Fragment.

H0Y7Q2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
XHYSCISELN SKLQDTLEQI EEQLDVALSK ICKNFDINHY TKVQQAYRLL
60 70 80 90 100
GKTQTAMDQL HMHFTQAIHN TVFQVVLGYV ELCAGNTDTK FQKLQYKDLC
110 120 130 140 150
THVTPDSYIP CLADLCKALW EVMLSYYRTM EWHEKHDNED TASASEGSNM
160 170 180 190 200
IGTEETNFDR GYIKKKLEHG LTRIWQDVQL KVKTYLLGTD LSIFKYDDFI
210 220 230 240 250
FVLDIISRLM QVGEEFCGSK SEVLQESIRK QSVNYFKNYH RTRLDELRMF
260 270 280 290 300
LENETWELCP VKSNFSILQL HEFKFMEQSR SPSVSPSKQP VSTSSKTVTL
310 320 330 340 350
FEQYCSGGNP FEIQANHKDE ETEDVLASNG YESDEQEKSA YQEYDSDSDV
360 370 380 390 400
PEELKRDYVD EQTGDGPVKS VSRETLKSRK KSDYSLNKVN APILTNTTLN
410 420 430 440 450
VIRLVDGVSL CCLGWSTVAH LHSLQAPPPG FKPFSCLSLP RSWDYRRPPP
460
RPANFLYFLF FSRDGVSPC
Length:469
Mass (Da):54,034
Last modified:February 22, 2012 - v1
Checksum:iA31ED9BBE2EC5878
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002379 Genomic DNA. No translation available.
AC002453 Genomic DNA. No translation available.
KF511049 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000458707; ENSP00000414450; ENSG00000004766.
UCSCiuc064fjr.1. human.

Similar proteinsi

Entry informationi

Entry nameiH0Y7Q2_HUMAN
AccessioniPrimary (citable) accession number: H0Y7Q2
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: October 25, 2017
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported