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Protein
Submitted name:

AT-rich interactive domain-containing protein 1B

Gene

ARID1B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interactive domain-containing protein 1BImported
Gene namesi
Name:ARID1BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000049618.21.
HGNCiHGNC:18040. ARID1B.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000049618.

PTM / Processingi

Proteomic databases

EPDiH0Y7H8.
MaxQBiH0Y7H8.
PeptideAtlasiH0Y7H8.
PRIDEiH0Y7H8.

Expressioni

Gene expression databases

BgeeiENSG00000049618.
ExpressionAtlasiH0Y7H8. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliH0Y7H8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini575 – 666ARIDInterPro annotationAdd BLAST92

Phylogenomic databases

GeneTreeiENSGT00550000074575.

Family and domain databases

Gene3Di1.10.150.60. 1 hit.
1.25.10.10. 1 hit.
InterProiView protein in InterPro
IPR001606. ARID_dom.
IPR036431. ARID_dom_sf.
IPR011989. ARM-like.
IPR021906. BAF250/Osa.
IPR033388. BAF250_C.
PANTHERiPTHR12656. PTHR12656. 2 hits.
PfamiView protein in Pfam
PF01388. ARID. 1 hit.
PF12031. BAF250_C. 1 hit.
SMARTiView protein in SMART
SM00501. BRIGHT. 1 hit.
SUPFAMiSSF46774. SSF46774. 1 hit.
PROSITEiView protein in PROSITE
PS51011. ARID. 1 hit.

Sequencei

Sequence statusi: Fragment.

H0Y7H8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
SPGTPGPTMG RSQGSPMDPM VMKRPQLYGM GSNPHSQPQQ SSPYPGGSYG
60 70 80 90 100
PPGPQRYPIG IQGRTPGAMA GMQYPQQQMP PQYGQQGVSG YCQQGQQPYY
110 120 130 140 150
SQQPQPPHLP PQAQYLPSQS QQRYQPQQDM SQEGYGTRSQ PPLAPGKPNH
160 170 180 190 200
EDLNLIQQER PSSLPDLSGS IDDLPTGTEA TLSSAVSASG STSSQGDQSN
210 220 230 240 250
PAQSPFSPHA SPHLSSIPGG PSPSPVGSPV GSNQSRSGPI SPASIPGFMA
260 270 280 290 300
GTQRNPQMAQ YGPQQTGPSM SPHPSPGGQM HAGISSFQQS NSSGTYGPQM
310 320 330 340 350
SQYGPQGNYS RPPAYSGVPS ASYSGPGPGM GISANNQMHG QGPSQPCGAV
360 370 380 390 400
PLGRMPSAGM QNRPFPGNMS SMTPSSPGMS QQGGPGMGPP MPTVNRKAQE
410 420 430 440 450
AAAAVMQAAA NSAQSRQGSF PGMNQSGLMA SSSPYSQPMN NSSSLMNTQA
460 470 480 490 500
PPYSMAPAMV NSSAASVGLA DMMSPGESKL PLPLKADGKE EGTPQPESKS
510 520 530 540 550
KDSYSSQGIS QPPTPGNLPV PSPMSPSSAS ISSFHGDESD SISSPGWPKT
560 570 580 590 600
PSSPKSSSST TTGEKITKVY ELGNEPERKL WVDRYLTFME ERGSPVSSLP
610 620 630 640 650
AVGKKPLDLF RLYVCVKEIG GLAQVNKNKK WRELATNLNV GTSSSAASSL
660 670 680 690 700
KKQYIQYLFA FECKIERGEE PPPEVFSTGD TKKQPKLQPP SPANSGSLQG
710 720 730 740 750
PQTPQSTGSN SMAEVPGDLK PPTPASTPHG QMTPMQGGRS STISVHDPFS
760 770 780 790 800
DVSDSSFPKR NSMTPNAPYQ QGMSMPDVMG RMPYEPNKDP FGGMRKVPGS
810 820 830 840 850
SEPFMTQGQM PNSSMQDMYN QSPSGAMSNL GMGQRQQFPY GASYDRRHEP
860 870 880 890 900
YGQQYPGQGP PSGQPPYGGH QPGLYPQQPN YKRHMDGMYG PPAKRHEGDM
910 920 930 940 950
YNMQYSSQQQ EMYNQYGGSY SGPDRRPIQG QYPYPYSRER MQGPGQIQTH
960 970 980 990 1000
GIPPQMMGGP LQSSSSEGPQ QNMWAARNDM PYPYQNRQGP GGPTQAPPYP
1010 1020 1030 1040 1050
GMNRTDDMMV PDQRINHESQ WPSHVSQRQP YMSSSASMQP ITRPPQPSYQ
1060 1070 1080 1090 1100
TPPSLPNHIS RAPSPASFQR SLENRMSPSK SPFLPSMKMQ KVMPTVPTSQ
1110 1120 1130 1140 1150
VTGPPPQPPP IRREITFPPG SVEASQPVLK QRRKITSKDI VTPEAWRVMM
1160 1170 1180 1190 1200
SLKSGLLAES TWALDTINIL LYDDSTVATF NLSQLSGFLE LLVEYFRKCL
1210 1220 1230 1240 1250
IDIFGILMEY EVGDPSQKAL DHNAARKDDS QSLADDSGKE EEDAECIDDD
1260 1270 1280 1290 1300
EEDEEDEEED SEKTESDEKS SIALTAPDAA ADPKEKPKQA SKFDKLPIKI
1310 1320 1330 1340 1350
VKKNNLFVVD RSDKLGRVQE FNSGLLHWQL GGGDTTEHIQ THFESKMEIP
1360 1370 1380 1390 1400
PRRRPPPPLS SAGRKKEQEG KGDSEEQQEK SIIATIDDVL SARPGALPED
1410 1420 1430 1440 1450
ANPGPQTESS KFPFGIQQAK SHRNIKLLED EPRSRDETPL CTIAHWQDSL
1460 1470 1480 1490 1500
AKRCICVSNI VRSLSFVPGN DAEMSKHPGL VLILGKLILL HHEHPERKRA
1510 1520 1530 1540 1550
PQTYEKEEDE DKGVACSKDE WWWDCLEVLR DNTLVTLANI SGQLDLSAYT
1560 1570 1580 1590 1600
ESICLPILDG LLHWMVCPSA EAQDPFPTVG PNSVLSPQRL VLETLCKLSI
1610 1620 1630 1640 1650
QDNNVDLILA TPPFSRQEKF YATLVRYVGD RKNPVCREMS MALLSNLAQG
1660 1670 1680 1690 1700
DALAARAIAV QKGSIGNLIS FLEDGVTMAQ YQQSQHNLMH MQPPPLEPPS
1710 1720 1730 1740 1750
VDMMCRAAKA LLAMARVDEN RSEFLLHEGR LLDISISAVL NSLVASVICD

VLFQIGQL
Length:1,758
Mass (Da):190,696
Last modified:February 22, 2012 - v1
Checksum:i622F715187117CC8
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL049820 Genomic DNA. No translation available.
AL136091 Genomic DNA. No translation available.
AL162578 Genomic DNA. No translation available.
AL355297 Genomic DNA. No translation available.
AL591545 Genomic DNA. No translation available.
KF458328 Genomic DNA. No translation available.
KF458335 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000414678; ENSP00000412835; ENSG00000049618.
UCSCiuc063smd.1. human.

Similar proteinsi

Entry informationi

Entry nameiH0Y7H8_HUMAN
AccessioniPrimary (citable) accession number: H0Y7H8
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: November 22, 2017
This is version 48 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported