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Protein
Submitted name:

Nuclease-sensitive element-binding protein 1

Gene

YBX1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Nuclease-sensitive element-binding protein 1Imported
Gene namesi
Name:YBX1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

EuPathDBiHostDB:ENSG00000065978.17.
HGNCiHGNC:8014. YBX1.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000065978.

PTM / Processingi

Proteomic databases

MaxQBiH0Y449.
PaxDbiH0Y449.
PeptideAtlasiH0Y449.
PRIDEiH0Y449.

Expressioni

Gene expression databases

BgeeiENSG00000065978.
ExpressionAtlasiH0Y449. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliH0Y449.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini125 – 178CSPInterPro annotationAdd BLAST54

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
GeneTreeiENSGT00880000137907.
OrthoDBiEOG091G0W9A.
PhylomeDBiH0Y449.

Family and domain databases

CDDicd04458. CSP_CDS. 1 hit.
InterProiView protein in InterPro
IPR011129. CSD.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
PfamiView protein in Pfam
PF00313. CSD. 1 hit.
PRINTSiPR00050. COLDSHOCK.
SMARTiView protein in SMART
SM00357. CSP. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Fragment.

H0Y449-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
XRVRRGPLPA DRPRALGPAR RCSRHPHPAP FRVCSEGAAH RLRRPERLPL
60 70 80 90 100
PSRALRPRPA HTPILGPAPR ACPGAPRASD SPTCAAAAAT AWPRTRAVER
110 120 130 140 150
KGCQVAAAAG VRGTGCPSRA DLEKDSWNDT KEDVFVHQTA IKKNNPRKYL
160 170 180 190 200
RSVGDGETVE FDVVEGEKGA EAANVTGPGG VPVQGSKYAA DRNHYRRYPR
210 220 230 240 250
RRGPPRNYQQ NYQNSESGEK NEGSESAPEG QAQQRRPYRR RRFPPYYMRR
260 270 280 290 300
PYGRRPQYSN PPVQGEVMEG ADNQGAGEQG RPVRQNMYRG YRPRFRRGPP
310 320 330 340 350
RQRQPREDGN EEDKENQGDE TQGQQPPQRR YRRNFNYRRR RPENPKPQDG
360 370
KETKAADPPA ENSSAPEAEQ GGAE
Length:374
Mass (Da):42,017
Last modified:February 22, 2012 - v1
Checksum:i3C904FC60A88EC81
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC098484 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000436427; ENSP00000389639; ENSG00000065978.
UCSCiuc057fju.1. human.

Similar proteinsi

Entry informationi

Entry nameiH0Y449_HUMAN
AccessioniPrimary (citable) accession number: H0Y449
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: October 25, 2017
This is version 46 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported