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Protein
Submitted name:

DEAD-box helicase 28

Gene

DDX28

Organism
Otolemur garnettii (Small-eared galago) (Garnett's greater bushbaby)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
DEAD-box helicase 28Imported
Gene namesi
Name:DDX28Imported
OrganismiOtolemur garnettii (Small-eared galago) (Garnett's greater bushbaby)Imported
Taxonomic identifieri30611 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesStrepsirrhiniLorisiformesGalagidaeOtolemur
Proteomesi
  • UP000005225 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi30611.ENSOGAP00000015126.

Structurei

3D structure databases

ProteinModelPortaliH0XGC7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini127 – 157Q_MOTIFInterPro annotationAdd BLAST31
Domaini160 – 352Helicase ATP-bindingInterPro annotationAdd BLAST193
Domaini381 – 537Helicase C-terminalInterPro annotationAdd BLAST157

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi127 – 157Q motifPROSITE-ProRule annotationAdd BLAST31

Phylogenomic databases

eggNOGiKOG0330. Eukaryota.
ENOG410XQU7. LUCA.
GeneTreeiENSGT00730000110914.
InParanoidiH0XGC7.
OMAiLHCIMPH.
OrthoDBiEOG091G06DC.
TreeFamiTF324977.

Family and domain databases

CDDicd00079. HELICc. 1 hit.
InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

H0XGC7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALSRPLRLL SLVTRMLLGP RRDLAIRGPD EHLPVVRIPL ALQRRQEQQE
60 70 80 90 100
SRRQSRRAPV LVRPGPLLVS ARRPEFNQPA RLTLGRWESA PLASRGWKNR
110 120 130 140 150
RACRDHFSIE RAQLEVPALQ KLLSNENTFE DLGLEPHVLR ALQEAAPEVV
160 170 180 190 200
RPTNVQSRTI PPLLRGRHIL CAAETGSGKT LSYLLPLLQR LVGRPRLGSS
210 220 230 240 250
QISAPRGLVL VPSRELAEQV WAVARVLGNS LGLQVRELGG GHGMRRIRLR
260 270 280 290 300
LSKQPTADVL VATPGALWKA LKSRLISLEQ LSFLVLDEAD TLLDESFLEL
310 320 330 340 350
VDYILEKSHI AEGPSDLEDP YNPKAQLVLV GATFPEGVGQ LLSKVTSPDS
360 370 380 390 400
LRTITSPKLH CIMPHVRQTF MRLKGAEKVT ELVQILKHHE KADRTGSTGS
410 420 430 440 450
VLVFCNSSST VNWLGYILDD HKIQHLRLQG QMPASMRVGI FQSFQKGSRD
460 470 480 490 500
ILLCTDIASR GLDSIHVELV VNYDFPFTLQ DYIHRAGRVG RVGSEVPGTV
510 520 530 540
ISFVTHPWDV SLVQKIELAA RRRKSLPGLE SSVKEPLPQQ I
Length:541
Mass (Da):60,329
Last modified:February 22, 2012 - v1
Checksum:i22AC326DC6425849
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAQR03153000 Genomic DNA. No translation available.
RefSeqiXP_003799418.1. XM_003799370.2.

Genome annotation databases

EnsembliENSOGAT00000016898; ENSOGAP00000015126; ENSOGAG00000016895.
GeneIDi100940555.

Similar proteinsi

Entry informationi

Entry nameiH0XGC7_OTOGA
AccessioniPrimary (citable) accession number: H0XGC7
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: October 25, 2017
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported