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H0VNX6 (H0VNX6_CAVPO) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Uncharacterized protein Ensembl ENSCPOP00000012175
Gene names
Name:TTC17 Ensembl ENSCPOP00000012175
OrganismCavia porcellus (Guinea pig) [Reference proteome] Ensembl ENSCPOP00000012175
Taxonomic identifier10141 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Hystricognathi › Caviidae › Cavia

Protein attributes

Sequence length1198 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSCPOP00000012175

Sequences

Sequence LengthMass (Da)Tools
H0VNX6 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: 448CD5DBDFF58FBA

FASTA1,198135,420
        10         20         30         40         50         60 
MAAAVGVRGR CDLPPCSGPR WLLSLSTLLS VAARGAFATT HWVVTEDGKI QQQVDSPMNL 

        70         80         90        100        110        120 
KHPHDLVILM RQETTVNYLK ELEKQLVAQK IHIEENEDRD TGLEQRHNKE DPDCIKAKVP 

       130        140        150        160        170        180 
LGDLDLYDGT YITLESKDIS PEDYIDAESP VPPDPEQPDC TKILELPYSI HAFQHLRGVQ 

       190        200        210        220        230        240 
ERVNLSAPLL PKEDPIFTYL SKRLGRSIDD IGHLIHEGLQ KNSSSWVLYN MASFYWRIKN 

       250        260        270        280        290        300 
EPYQVVECAM RALHFSSRHN KDIALVNLAN VLHRAHFSAD AAVVVHAALD DSDFFTSYYT 

       310        320        330        340        350        360 
LGNIYAMLGE YNHSVLCYDH ALQAKPGFKQ AIKRKHAVLC QQKLEQKLEA QHRSLQRTLN 

       370        380        390        400        410        420 
ELKEYQKQHD HYLRQQEILE KHKLIQEEQI LRNIIHETQM AKEAQLGNHQ ICRLVNQQHS 

       430        440        450        460        470        480 
LHCQWDQPVR YHRGDIFENV DYVQFGEDSS TSSMTSVNFD VPANQSDTSD SVTSSPVAHS 

       490        500        510        520        530        540 
VLWIWGRDSD AYRDKQHILW PKRADCAESY PRVPAGGELP TYFLPPENKG LRIHELNSDD 

       550        560        570        580        590        600 
YSSEEEAQTP DCSITDFRKS HTLSYLVKEL EVRMDLKAKI PDDHARKILL SRINNYTIPE 

       610        620        630        640        650        660 
EEIGSFLFHA INKPNAPVWL ILNEAGLYWR AVGNSTFAIA CLQRALNLAP LQYQDIPLVN 

       670        680        690        700        710        720 
LANLLIHYGL HLDATKLLLQ ALAVNSSEPL TFLSLGNAYL ALKNISGALE AFRQALKLTT 

       730        740        750        760        770        780 
KCPECENSLK LIRCMQFYPF LYNISSSVCS GNCHEKALDN SHGKQKYFEN PQSLDAAQEE 

       790        800        810        820        830        840 
PSERGAEDDL GLSVENSGRG PDALRLETTV VEESNGSDEM ENSDETKMSE EILALVDEFQ 

       850        860        870        880        890        900 
QAWPLEGFGG GLEMKGRRLD LQGIRVLKKG PQDGVARSSC YGDCRSEDDE ATEWITFQVK 

       910        920        930        940        950        960 
RVKKPKGEHK KTPGKKVESN QAENGPRYQA NLEITGPKVA SPGPQGKKRD YQSLGWPSPD 

       970        980        990       1000       1010       1020 
ECLKLRWVEL TAIVSTWLAV SSKNIDITEH IDFATPIQQP ATEPLCNGNL PTSMHTLDHL 

      1030       1040       1050       1060       1070       1080 
HGVSNRASLH YTGESQLTEV LQNLGKDQYP QQSLEQIGTR IAKVLEKNQT SWVLSSMAAL 

      1090       1100       1110       1120       1130       1140 
YWRVKGQGKK AIDCLRQALH YAPHQMKDVP LISLANILHN AKLWNDAVIV ATMAVEIAPH 

      1150       1160       1170       1180       1190 
FAVNHFTLGN VYVAMEEFEK ALVWYESTLK LQPEFVPAKN RIQTIQCHLM LKKGRRSP

« Hide

References

« Hide 'large scale' references
[1]"Version 3 of The Genome Sequence of Cavia porcellus (guinea pig)."
The Genome Sequencing Platform, The Genome Assembly Team
Di Palma F., Gnerre S., Mauceli E., Grabherr M., Johnson J., Chang J., Lander E.S., Lindblad-Toh K.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 2N Ensembl ENSCPOP00000012175.
[2]Ensembl
Submitted (JAN-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: 2N Ensembl ENSCPOP00000012175.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AAKN02046804 Genomic DNA. No translation available.
AAKN02046805 Genomic DNA. No translation available.
AAKN02046806 Genomic DNA. No translation available.
AAKN02046807 Genomic DNA. No translation available.
RefSeqXP_003465261.1. XM_003465213.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSCPOT00000013658; ENSCPOP00000012175; ENSCPOG00000013524.
GeneID100724269.

Phylogenomic databases

GeneTreeENSGT00390000006196.
OMAIGHLIHE.

Family and domain databases

Gene3D1.25.40.10. 4 hits.
InterProIPR001440. TPR-1.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR019734. TPR_repeat.
[Graphical view]
PfamPF00515. TPR_1. 2 hits.
[Graphical view]
SMARTSM00028. TPR. 6 hits.
[Graphical view]
PROSITEPS50005. TPR. 4 hits.
PS50293. TPR_REGION. 3 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameH0VNX6_CAVPO
AccessionPrimary (citable) accession number: H0VNX6
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: March 6, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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