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Protein

Agmatinase

Gene

speB

Organism
Hafnia alvei ATCC 51873
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the formation of putrescine from agmatine.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Catalytic activityi

Agmatine + H2O = putrescine + urea.UniRule annotationSAAS annotation

Cofactori

Mn2+UniRule annotationSAAS annotation

Pathwayi: putrescine biosynthesis via agmatine pathway

This protein is involved in step 1 of the subpathway that synthesizes putrescine from agmatine.UniRule annotation
Proteins known to be involved in this subpathway in this organism are:
  1. Agmatinase (speB)
This subpathway is part of the pathway putrescine biosynthesis via agmatine pathway, which is itself part of Amine and polyamine biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes putrescine from agmatine, the pathway putrescine biosynthesis via agmatine pathway and in Amine and polyamine biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi126ManganeseUniRule annotation1
Metal bindingi149ManganeseUniRule annotation1
Metal bindingi151ManganeseUniRule annotation1
Metal bindingi153ManganeseUniRule annotation1
Metal bindingi230ManganeseUniRule annotation1
Metal bindingi232ManganeseUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseUniRule annotationSAAS annotation
Biological processPolyamine biosynthesisUniRule annotationSAAS annotation, Putrescine biosynthesisUniRule annotationSAAS annotation, Spermidine biosynthesisUniRule annotationSAAS annotation
LigandManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

UniPathwayiUPA00534; UER00287

Names & Taxonomyi

Protein namesi
Recommended name:
AgmatinaseUniRule annotation (EC:3.5.3.11UniRule annotation)
Alternative name(s):
Agmatine ureohydrolaseUniRule annotation
Short name:
AUHUniRule annotation
Gene namesi
Name:speBUniRule annotation
ORF Names:HMPREF0454_01127Imported
OrganismiHafnia alvei ATCC 51873Imported
Taxonomic identifieri1002364 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesHafniaceaeHafnia
Proteomesi
  • UP000005959 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliG9Y3C5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the arginase family. Agmatinase subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

OrthoDBiPOG091H0384

Family and domain databases

HAMAPiMF_01418 SpeB, 1 hit
InterProiView protein in InterPro
IPR023694 Agmatinase
IPR005925 Agmatinase-rel
IPR006035 Ureohydrolase
IPR023696 Ureohydrolase_dom_sf
IPR020855 Ureohydrolase_Mn_BS
PfamiView protein in Pfam
PF00491 Arginase, 1 hit
PIRSFiPIRSF036979 Arginase, 1 hit
SUPFAMiSSF52768 SSF52768, 1 hit
TIGRFAMsiTIGR01230 agmatinase, 1 hit
PROSITEiView protein in PROSITE
PS01053 ARGINASE_1, 1 hit
PS51409 ARGINASE_2, 1 hit

Sequencei

Sequence statusi: Complete.

G9Y3C5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTLGNKPDN SLVSNAFGFL RFPLNFQPYD SDADWVITGV PFDMATSGRA
60 70 80 90 100
GGRHGPAAIR QVSTNLAWEG NRWPWNFDLR DRLNVVDCGD VVFSFGDAQD
110 120 130 140 150
MSDSLQAHTE KLLESGKRCL TFGGDHFVTL PLLRAHAKHF GKMALVHFDA
160 170 180 190 200
HTDTYANGSK FDHGTMFFHA PNEGLIDPNH SVQIGIRTEF DRDNGFTVLD
210 220 230 240 250
AAQVNDRGVD DVLAQIKQIV GDMPVYLTFD IDCLDPAFAP GTGTPVIGGL
260 270 280 290 300
TSDRALKLVR GLKDLNIVGM DVVEVAPAYD QSEITALAAA TLALEMLYIQ

ADKKGE
Length:306
Mass (Da):33,403
Last modified:February 22, 2012 - v1
Checksum:iFD41C1A7EE5EDAD9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGCI01000017 Genomic DNA Translation: EHM45588.1
RefSeqiWP_004846823.1, NZ_JH417496.1

Genome annotation databases

EnsemblBacteriaiEHM45588; EHM45588; HMPREF0454_01127
PATRICifig|1002364.3.peg.1038

Similar proteinsi

Entry informationi

Entry nameiG9Y3C5_HAFAL
AccessioniPrimary (citable) accession number: G9Y3C5
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: March 28, 2018
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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