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Protein

Maturase K

Gene

matK

Organism
Alpinia nigra
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW

GO - Biological processi

  1. mRNA processing Source: UniProtKB-KW
  2. tRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

mRNA processingSAAS annotation, tRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Maturase KSAAS annotation
Gene namesi
Name:matKImported
Encoded oniPlastid; ChloroplastImported
OrganismiAlpinia nigraImported
Taxonomic identifieri105678 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaZingiberalesZingiberaceaeAlpinia

Subcellular locationi

  1. Plastidchloroplast SAAS annotation

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

ChloroplastUniRule annotationSAAS annotation, Plastid

Family & Domainsi

Family and domain databases

InterProiIPR024937. Domain_X.
IPR024942. Maturase_MatK_N.
[Graphical view]
PfamiPF01348. Intron_maturas2. 1 hit.
PF01824. MatK_N. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

G9DRZ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
VLSLHLLQFL LHEYYNWNSL IIPNKSIYIF SKDNKRLFCF LYNLYIYEYE
60 70 80 90 100
FLLVFPCKQS SFLRLISSGV LLERIHFYVK IERLGVCRIF CQKTLWIFKD
110 120 130 140 150
PFIHYIRYQG KSILGSRGTH FLMKKWKYHL VHFWQYYFHF WSQPYRIDIN
160 170 180 190 200
KLSNYSFYFL GYFSSVQMNS SMVRNQMLDN SFLIDTPTKK FDTRIPIIPL
210 220 230 240
IRSLSKAQFC TVYGYPISKP IWTDLADCDI INRFGRICRK LSHY
Length:244
Mass (Da):29,672
Last modified:February 22, 2012 - v1
Checksum:i536C5A6D090BE66D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei244 – 2441Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JF953115 Genomic DNA. Translation: AEQ45749.1.
JF953116 Genomic DNA. Translation: AEQ45750.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JF953115 Genomic DNA. Translation: AEQ45749.1.
JF953116 Genomic DNA. Translation: AEQ45750.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR024937. Domain_X.
IPR024942. Maturase_MatK_N.
[Graphical view]
PfamiPF01348. Intron_maturas2. 1 hit.
PF01824. MatK_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants."
    China Plant BOL Group
    Li D.Z., Gao L.M., Li H.T., Wang H., Ge X.J., Liu J.Q., Chen Z.D., Zhou S.L., Chen S.L., Yang J.B., Fu C.X., Zeng C.X., Yan H.F., Zhu Y.J., Sun Y.S., Chen S.Y., Zhao L., Wang K., Yang T., Duan G.W.
    Proc. Natl. Acad. Sci. U.S.A. 108:19641-19646(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Li D.-Z., Gao L.-M., Li H.-T., Wang H., Ge X.-J.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiG9DRZ1_9LILI
AccessioniPrimary (citable) accession number: G9DRZ1
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: October 29, 2014
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.