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G9DRZ1 (G9DRZ1_9LILI) Unreviewed, UniProtKB/TrEMBL

Last modified January 9, 2013. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:matK EMBL AEQ45749.1
Encoded onPlastid; Chloroplast EMBL AEQ45749.1
OrganismAlpinia nigra EMBL AEQ45749.1
Taxonomic identifier105678 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaZingiberalesZingiberaceaeAlpinia

Protein attributes

Sequence length244 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Function

Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns By similarity. RuleBase RU004226 SAAS SAAS024942

Subcellular location

Plastidchloroplast By similarity SAAS SAAS024942.

Ontologies

Keywords
   Biological processmRNA processing SAAS SAAS024942
tRNA processing SAAS SAAS024942
   Cellular componentChloroplast RuleBase RU004226 SAAS SAAS024942 EMBL AEQ45749.1
Plastid
   LigandRNA-binding SAAS SAAS024942
Gene Ontology (GO)
   Biological_processmRNA processing

Inferred from electronic annotation. Source: UniProtKB-KW

tRNA processing

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentchloroplast

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AEQ45749.1
Non-terminal residue2441 EMBL AEQ45749.1

Sequences

Sequence LengthMass (Da)Tools
G9DRZ1 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: 536C5A6D090BE66D

FASTA24429,672
        10         20         30         40         50         60 
VLSLHLLQFL LHEYYNWNSL IIPNKSIYIF SKDNKRLFCF LYNLYIYEYE FLLVFPCKQS 

        70         80         90        100        110        120 
SFLRLISSGV LLERIHFYVK IERLGVCRIF CQKTLWIFKD PFIHYIRYQG KSILGSRGTH 

       130        140        150        160        170        180 
FLMKKWKYHL VHFWQYYFHF WSQPYRIDIN KLSNYSFYFL GYFSSVQMNS SMVRNQMLDN 

       190        200        210        220        230        240 
SFLIDTPTKK FDTRIPIIPL IRSLSKAQFC TVYGYPISKP IWTDLADCDI INRFGRICRK 


LSHY 

« Hide

References

[1]"Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants."
China Plant BOL Group
Li D.Z., Gao L.M., Li H.T., Wang H., Ge X.J., Liu J.Q., Chen Z.D., Zhou S.L., Chen S.L., Yang J.B., Fu C.X., Zeng C.X., Yan H.F., Zhu Y.J., Sun Y.S., Chen S.Y., Zhao L., Wang K., Yang T., Duan G.W.
Proc. Natl. Acad. Sci. U.S.A. 108:19641-19646(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]Li D.-Z., Gao L.-M., Li H.-T., Wang H., Ge X.-J.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
JF953115 Genomic DNA. Translation: AEQ45749.1.
JF953116 Genomic DNA. Translation: AEQ45750.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR024937. Domain_X.
IPR024942. Maturase_MatK_N.
[Graphical view]
PfamPF01348. Intron_maturas2. 1 hit.
PF01824. MatK_N. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG9DRZ1_9LILI
AccessionPrimary (citable) accession number: G9DRZ1
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: January 9, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)