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Protein
Submitted name:

DNA ligase, putative

Gene

ligC

Organism
Rhizobium fredii (strain HH103) (Sinorhizobium fredii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSFRE1117943:GJT5-5208-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, putativeImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligCImported
Ordered Locus Names:SFHH103_06053Imported
Encoded oniPlasmid pSfHH103eImported
OrganismiRhizobium fredii (strain HH103) (Sinorhizobium fredii)Imported
Taxonomic identifieri1117943 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000007735 Componenti: Plasmid pSfHH103e

Structurei

3D structure databases

ProteinModelPortaliG9AHI1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

G9AHI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSPAHRKPT KETAPSRPAA KAKAIDVVSA GGFALPVSTA PMEARSAPEL
60 70 80 90 100
PSDGAWQYEP KWDGFRCLAF KSGGEVDLRA KSGKPLGRFF PEVIALLREL
110 120 130 140 150
GASQFVLDGE LVIEVDGRLS FDALQMRLHP AESRVQKLSQ QTPARLILFD
160 170 180 190 200
MLVDAKGAVL TDKPLSSRRA ALEAFATRNV IPDKLELSPF TLARQEAEHW
210 220 230 240 250
LTSWEAGATD GVVAKRRDGP YECGERAMVK VKRLKTADCV VGGFRYESGS
260 270 280 290 300
DKIGSLLLGL YDTDGTLNHV GFTATISDKE RPALTRRLEA LREPPGFTGN
310 320 330 340 350
APGGPSRWSA ERSGEWQPVR PELVVEVRFD HVSSRRFRHG TKLMRWRPDK
360
DPRQCTYEQI EPR
Length:363
Mass (Da):40,170
Last modified:February 22, 2012 - v1
Checksum:i1277FE52DB05583A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE616899 Genomic DNA. Translation: CCF00513.1.
RefSeqiWP_014332165.1. NC_016815.1.

Genome annotation databases

EnsemblBacteriaiCCF00513; CCF00513; SFHH103_06053.
KEGGisfh:SFHH103_06053.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE616899 Genomic DNA. Translation: CCF00513.1.
RefSeqiWP_014332165.1. NC_016815.1.

3D structure databases

ProteinModelPortaliG9AHI1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCF00513; CCF00513; SFHH103_06053.
KEGGisfh:SFHH103_06053.

Enzyme and pathway databases

BioCyciSFRE1117943:GJT5-5208-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HH103Imported.

Entry informationi

Entry nameiG9AHI1_RHIFH
AccessioniPrimary (citable) accession number: G9AHI1
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: July 22, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.