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G9ABJ8 (G9ABJ8_RHIFH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:SFHH103_02797 EMBL CCE97289.1
OrganismRhizobium fredii (strain HH103) (Sinorhizobium fredii) [Complete proteome] [HAMAP] EMBL CCE97289.1
Taxonomic identifier1117943 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length865 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
G9ABJ8 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: C79B5A6E22EEA225

FASTA86595,143
        10         20         30         40         50         60 
MAARSEPLSE YNRRRDFTKT REPKGAVART HAGRKRFLVQ KHDATRLHYD FRLEWEGVLK 

        70         80         90        100        110        120 
SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY GGGTVMLWDT GWWEPEGDPS 

       130        140        150        160        170        180 
KGLKKGKLSF KLHGSRMKGG WALVRMRPRD GEKRENWLLV KETDEIASED GENLIKENIT 

       190        200        210        220        230        240 
SVVTGRAMDE IAGGKGEKRA RFWHSNKSTA ANLKAGAIAE NDNARRRSAR RPSGKLPAFK 

       250        260        270        280        290        300 
APQLATLVTK APAGETWLNE AKFDGYRLLC AIGGGTVRCY TRNGLDWTEK FPAIAAALAE 

       310        320        330        340        350        360 
LDCKSALIDG EVVALSDAGP SFSALQKALR TGASTRLYAF DLIELDGKDL SREPLIERKE 

       370        380        390        400        410        420 
KLKLLLGSLG TTATVQYSEH VEGNGEHVLA AICKAGQEGI IAKEAKAPYR SGRTRSWLKV 

       430        440        450        460        470        480 
KCTRRQEFVI GGYTPSSKKG RPFASILVGT FEGGKLIYRG GVGTGFGEKV MQELAAAFAS 

       490        500        510        520        530        540 
RSRETPPFDS VPRERMRNAV WLKPDLVAEV DFAEFTADGH VRHGSFEGMR EDKEAKAVKL 

       550        560        570        580        590        600 
ETAKPTGAAP GAAKSKPSAK TSKASSAKGD TDVLGIHISH PDRILFQGQG ITKIDLARYY 

       610        620        630        640        650        660 
AVVAERMLPF TADHPVSLVR CPQGGQRHCF YQKHASDGFP DEIKEVPIEE SSGSTENYMY 

       670        680        690        700        710        720 
VRHAKGLVAA VQMGTLEFHI WGATIDKLET PDRLVFDFDP DPSVDFTTVK NAAVALRDEL 

       730        740        750        760        770        780 
ADIGLQSFAL VTGGKGVHVV VPLVRRASWD DAKSFAKAVA QNIADRDPDH FVATMSKAKR 

       790        800        810        820        830        840 
KGRIFIDWLR NERGATAIAP YSSRAREGGP IATPVGWDEM ERLSGANTFH IGDILERIEA 

       850        860 
DTDPWRDIGK VKQSLTKKMM DSVAK 

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References

[1]"Genome sequence of the soybean symbiont Sinorhizobium fredii HH103."
Weidner S., Becker A., Bonilla I., Jaenicke S., Lloret J., Margaret I., Puhler A., Ruiz-Sainz J.E., Schneiker-Bekel S., Szczepanowski R., Vinardell J.M., Zehner S., Gottfert M.
J. Bacteriol. 194:1617-1618(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HH103 EMBL CCE97289.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
HE616890 Genomic DNA. Translation: CCE97289.1.
RefSeqYP_005190114.1. NC_016812.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCE97289; CCE97289; SFHH103_02797.
GeneID11814800.
KEGGsfh:SFHH103_02797.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSFRE1117943:GJT5-2834-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG9ABJ8_RHIFH
AccessionPrimary (citable) accession number: G9ABJ8
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: April 16, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)