G9ABJ8 (G9ABJ8_RHIFH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase protein EMBL CCE97289.1

Gene names

Ordered Locus Names:

SFHH103_02797 EMBL CCE97289.1

Organism

Rhizobium fredii (strain HH103) (Sinorhizobium fredii) [Complete proteome] [HAMAP] EMBL CCE97289.1

Taxonomic identifier

1117943 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	865 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CCE97289.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G9ABJ8 [UniParc]. Last modified February 22, 2012. Version 1. Checksum: C79B5A6E22EEA225	FASTA	865	95,143
	10 20 30 40 50 60 MAARSEPLSE YNRRRDFTKT REPKGAVART HAGRKRFLVQ KHDATRLHYD FRLEWEGVLK 70 80 90 100 110 120 SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY GGGTVMLWDT GWWEPEGDPS 130 140 150 160 170 180 KGLKKGKLSF KLHGSRMKGG WALVRMRPRD GEKRENWLLV KETDEIASED GENLIKENIT 190 200 210 220 230 240 SVVTGRAMDE IAGGKGEKRA RFWHSNKSTA ANLKAGAIAE NDNARRRSAR RPSGKLPAFK 250 260 270 280 290 300 APQLATLVTK APAGETWLNE AKFDGYRLLC AIGGGTVRCY TRNGLDWTEK FPAIAAALAE 310 320 330 340 350 360 LDCKSALIDG EVVALSDAGP SFSALQKALR TGASTRLYAF DLIELDGKDL SREPLIERKE 370 380 390 400 410 420 KLKLLLGSLG TTATVQYSEH VEGNGEHVLA AICKAGQEGI IAKEAKAPYR SGRTRSWLKV 430 440 450 460 470 480 KCTRRQEFVI GGYTPSSKKG RPFASILVGT FEGGKLIYRG GVGTGFGEKV MQELAAAFAS 490 500 510 520 530 540 RSRETPPFDS VPRERMRNAV WLKPDLVAEV DFAEFTADGH VRHGSFEGMR EDKEAKAVKL 550 560 570 580 590 600 ETAKPTGAAP GAAKSKPSAK TSKASSAKGD TDVLGIHISH PDRILFQGQG ITKIDLARYY 610 620 630 640 650 660 AVVAERMLPF TADHPVSLVR CPQGGQRHCF YQKHASDGFP DEIKEVPIEE SSGSTENYMY 670 680 690 700 710 720 VRHAKGLVAA VQMGTLEFHI WGATIDKLET PDRLVFDFDP DPSVDFTTVK NAAVALRDEL 730 740 750 760 770 780 ADIGLQSFAL VTGGKGVHVV VPLVRRASWD DAKSFAKAVA QNIADRDPDH FVATMSKAKR 790 800 810 820 830 840 KGRIFIDWLR NERGATAIAP YSSRAREGGP IATPVGWDEM ERLSGANTFH IGDILERIEA 850 860 DTDPWRDIGK VKQSLTKKMM DSVAK

References

[1]

"Genome sequence of the soybean symbiont Sinorhizobium fredii HH103." Weidner S., Becker A., Bonilla I., Jaenicke S., Lloret J., Margaret I., Puhler A., Ruiz-Sainz J.E., Schneiker-Bekel S., Szczepanowski R., Vinardell J.M., Zehner S., Gottfert M. J. Bacteriol. 194:1617-1618(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HH103 EMBL CCE97289.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	HE616890 Genomic DNA. Translation: CCE97289.1.
RefSeq	YP_005190114.1. NC_016812.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CCE97289; CCE97289; SFHH103_02797.
GeneID	11814800.
KEGG	sfh:SFHH103_02797.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G9ABJ8_RHIFH

Accession

Primary (citable) accession number: G9ABJ8

Entry history

Integrated into UniProtKB/TrEMBL:	February 22, 2012
Last sequence update:	February 22, 2012
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)