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Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

SFHH103_02797

Organism
Rhizobium fredii (strain HH103) (Sinorhizobium fredii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSFRE1117943:GJT5-2834-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase proteinImported
Gene namesi
Ordered Locus Names:SFHH103_02797Imported
OrganismiRhizobium fredii (strain HH103) (Sinorhizobium fredii)Imported
Taxonomic identifieri1117943 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000007735: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G9ABJ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARSEPLSE YNRRRDFTKT REPKGAVART HAGRKRFLVQ KHDATRLHYD
60 70 80 90 100
FRLEWEGVLK SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY
110 120 130 140 150
GGGTVMLWDT GWWEPEGDPS KGLKKGKLSF KLHGSRMKGG WALVRMRPRD
160 170 180 190 200
GEKRENWLLV KETDEIASED GENLIKENIT SVVTGRAMDE IAGGKGEKRA
210 220 230 240 250
RFWHSNKSTA ANLKAGAIAE NDNARRRSAR RPSGKLPAFK APQLATLVTK
260 270 280 290 300
APAGETWLNE AKFDGYRLLC AIGGGTVRCY TRNGLDWTEK FPAIAAALAE
310 320 330 340 350
LDCKSALIDG EVVALSDAGP SFSALQKALR TGASTRLYAF DLIELDGKDL
360 370 380 390 400
SREPLIERKE KLKLLLGSLG TTATVQYSEH VEGNGEHVLA AICKAGQEGI
410 420 430 440 450
IAKEAKAPYR SGRTRSWLKV KCTRRQEFVI GGYTPSSKKG RPFASILVGT
460 470 480 490 500
FEGGKLIYRG GVGTGFGEKV MQELAAAFAS RSRETPPFDS VPRERMRNAV
510 520 530 540 550
WLKPDLVAEV DFAEFTADGH VRHGSFEGMR EDKEAKAVKL ETAKPTGAAP
560 570 580 590 600
GAAKSKPSAK TSKASSAKGD TDVLGIHISH PDRILFQGQG ITKIDLARYY
610 620 630 640 650
AVVAERMLPF TADHPVSLVR CPQGGQRHCF YQKHASDGFP DEIKEVPIEE
660 670 680 690 700
SSGSTENYMY VRHAKGLVAA VQMGTLEFHI WGATIDKLET PDRLVFDFDP
710 720 730 740 750
DPSVDFTTVK NAAVALRDEL ADIGLQSFAL VTGGKGVHVV VPLVRRASWD
760 770 780 790 800
DAKSFAKAVA QNIADRDPDH FVATMSKAKR KGRIFIDWLR NERGATAIAP
810 820 830 840 850
YSSRAREGGP IATPVGWDEM ERLSGANTFH IGDILERIEA DTDPWRDIGK
860
VKQSLTKKMM DSVAK
Length:865
Mass (Da):95,143
Last modified:February 22, 2012 - v1
Checksum:iC79B5A6E22EEA225
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE616890 Genomic DNA. Translation: CCE97289.1.
RefSeqiWP_014329710.1. NC_016812.1.
YP_005190114.1. NC_016812.1.

Genome annotation databases

EnsemblBacteriaiCCE97289; CCE97289; SFHH103_02797.
GeneIDi11814800.
KEGGisfh:SFHH103_02797.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE616890 Genomic DNA. Translation: CCE97289.1.
RefSeqiWP_014329710.1. NC_016812.1.
YP_005190114.1. NC_016812.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCE97289; CCE97289; SFHH103_02797.
GeneIDi11814800.
KEGGisfh:SFHH103_02797.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciSFRE1117943:GJT5-2834-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HH103Imported.

Entry informationi

Entry nameiG9ABJ8_RHIFH
AccessioniPrimary (citable) accession number: G9ABJ8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: March 4, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.