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G9A0Q4 (G9A0Q4_RHIFH) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length436 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1001 By similarity HAMAP-Rule MF_00455
Active site1031 By similarity HAMAP-Rule MF_00455
Metal binding2311Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2951Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3061Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3081Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3381Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
G9A0Q4 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: 9D9181BECB3AE72E

FASTA43648,884
        10         20         30         40         50         60 
MSTGFFGDIA KIKYEGLEST NPLAFRHYNP DEVVLGKRME DHLRFAVAYW HTFVWPGGDP 

        70         80         90        100        110        120 
FGGQTFERPW FKDTMDAAKL KADVAFEFFQ LLGVPFYCFH DADVRPEGRN FAENTSNLNE 

       130        140        150        160        170        180 
IVDHFAEKQA ETGVKLLWGT ANLFSNRRYM GGAATNPDPD VFAFAAATVK TCIDATQRLG 

       190        200        210        220        230        240 
GENYVLWGGR EGYETLLNTD LKRELDQLGR FVNLVVEYKH KIGFKGAILI EPKPQEPTKH 

       250        260        270        280        290        300 
QYDFDVATVY GFLKKYGLEN EVKVNIEQGH AILAGHSFEH ELALANALGI FGSIDMNRND 

       310        320        330        340        350        360 
YQSGWDTDQF PNNVPEMALA YYHVLSGGGF KSGGTNFDAK LRRQSIDPED LLIGHIGGMD 

       370        380        390        400        410        420 
CCARGLKAAA KMVEDKALSG PLEKRYAGWN VPEAKKMLDG GFSLEEIEAW VRKADLNPQA 

       430 
KSGKQEYLEN VVNRYV 

« Hide

References

[1]"Genome sequence of the soybean symbiont Sinorhizobium fredii HH103."
Weidner S., Becker A., Bonilla I., Jaenicke S., Lloret J., Margaret I., Puhler A., Ruiz-Sainz J.E., Schneiker-Bekel S., Szczepanowski R., Vinardell J.M., Zehner S., Gottfert M.
J. Bacteriol. 194:1617-1618(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HH103 EMBL CCE97450.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
HE616890 Genomic DNA. Translation: CCE97450.1.
RefSeqYP_005190275.1. NC_016812.1.

3D structure databases

ProteinModelPortalG9A0Q4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCE97450; CCE97450; SFHH103_02958.
GeneID11814945.
KEGGsfh:SFHH103_02958.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Enzyme and pathway databases

BioCycSFRE1117943:GJT5-2996-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG9A0Q4_RHIFH
AccessionPrimary (citable) accession number: G9A0Q4
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: June 11, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)