Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

G8ZRF1

- G8ZRF1_TORDC

UniProt

G8ZRF1 - G8ZRF1_TORDC

Protein

DNA ligase

Gene

TDEL0C02040

Organism
Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) (Yeast) (Candida colliculosa)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 13 (01 Oct 2014)
      Sequence version 1 (22 Feb 2012)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Name:TDEL0C02040Imported
    ORF Names:TDEL_0C02040Imported
    OrganismiTorulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) (Yeast) (Candida colliculosa)Imported
    Taxonomic identifieri1076872 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeTorulaspora
    ProteomesiUP000005627: Chromosome 3

    Structurei

    3D structure databases

    ProteinModelPortaliG8ZRF1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10747.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G8ZRF1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFRVVGRPLV ELLINKGMSS GKKQATLARF FSAVQKDDTK EKVNGDVKII    50
    ESRDNQDEPV TKKFKSSSPV KLQTSSLSPV KSAGVESGDK PVSPDLYYSK 100
    VPYSDVCNVF QEIEGTSSRL SIIKICSEFF SRIMKDNPQN LIPTTYLFIN 150
    RLGPDYEPGL ELGLGEGLLM KTISEACGKS LVQVKNRYRE MGDLGQIALE 200
    ARNVQPTMFK PKPLTVGEVF ENLRAIAHSQ GKDSQTRKIK LIKRMLTACE 250
    GVEAKFLIRS LESKLRIGLA EKTVLISLSK ALLTNEGETG KEPSMELVEQ 300
    AEAKIRDAFC QVPNYEIVIN ACLDYGIMEL DKHCRLRPGI PLKPMLAKPT 350
    KSITEVLDRF QGQTFTSEYK YDGERAQVHL LEDGTMRIYS RNGENMTERY 400
    PEISIRDFVA DLEHTKTLIL DCEAVAWDKV QQKILPFQVL STRKRKDVEA 450
    KDVKVRVCLF AFDIICHNGE RQINKSLRER RELLAQVTKP VAGEFQYAVE 500
    LTTSSVEELQ KFLDQSVKDS CEGLMVKMLD GPESHYEPSK RSRNWLKLKK 550
    DYLDGVGDSL DLCVLGAYYG RGKRTGTYGG FLLGCYNQDS GEFETCCKIG 600
    TGFSDEMLQQ LYERFSKTTL DGPKATYVFD SSAEPDVWFE PTTLFEVLTA 650
    DLSLSPVYKA GASTYDKGVS LRFPRFVRLR DDKSVEDATS SAQIVELYQD 700
    QSHVA 705
    Length:705
    Mass (Da):79,333
    Last modified:February 22, 2012 - v1
    Checksum:i39C39F49AD819B0B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE616744 Genomic DNA. Translation: CCE91093.1.
    RefSeqiXP_003680304.1. XM_003680256.1.

    Genome annotation databases

    GeneIDi11500428.
    KEGGitdl:TDEL_0C02040.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE616744 Genomic DNA. Translation: CCE91093.1 .
    RefSeqi XP_003680304.1. XM_003680256.1.

    3D structure databases

    ProteinModelPortali G8ZRF1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 11500428.
    KEGGi tdl:TDEL_0C02040.

    Phylogenomic databases

    KOi K10747.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents."
      Gordon J.L., Armisen D., Proux-Wera E., OhEigeartaigh S.S., Byrne K.P., Wolfe K.H.
      Proc. Natl. Acad. Sci. U.S.A. 108:20024-20029(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866Imported.

    Entry informationi

    Entry nameiG8ZRF1_TORDC
    AccessioniPrimary (citable) accession number: G8ZRF1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 22, 2012
    Last sequence update: February 22, 2012
    Last modified: October 1, 2014
    This is version 13 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3