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G8ZRF1

- G8ZRF1_TORDC

UniProt

G8ZRF1 - G8ZRF1_TORDC

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Protein
DNA ligase
Gene
TDEL0C02040, TDEL_0C02040
Organism
Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) (Yeast) (Candida colliculosa)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:TDEL0C02040Imported
ORF Names:TDEL_0C02040Imported
OrganismiTorulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) (Yeast) (Candida colliculosa)
Taxonomic identifieri1076872 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeTorulaspora
ProteomesiUP000005627: Chromosome 3

Structurei

3D structure databases

ProteinModelPortaliG8ZRF1.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8ZRF1-1 [UniParc]FASTAAdd to Basket

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MFRVVGRPLV ELLINKGMSS GKKQATLARF FSAVQKDDTK EKVNGDVKII    50
ESRDNQDEPV TKKFKSSSPV KLQTSSLSPV KSAGVESGDK PVSPDLYYSK 100
VPYSDVCNVF QEIEGTSSRL SIIKICSEFF SRIMKDNPQN LIPTTYLFIN 150
RLGPDYEPGL ELGLGEGLLM KTISEACGKS LVQVKNRYRE MGDLGQIALE 200
ARNVQPTMFK PKPLTVGEVF ENLRAIAHSQ GKDSQTRKIK LIKRMLTACE 250
GVEAKFLIRS LESKLRIGLA EKTVLISLSK ALLTNEGETG KEPSMELVEQ 300
AEAKIRDAFC QVPNYEIVIN ACLDYGIMEL DKHCRLRPGI PLKPMLAKPT 350
KSITEVLDRF QGQTFTSEYK YDGERAQVHL LEDGTMRIYS RNGENMTERY 400
PEISIRDFVA DLEHTKTLIL DCEAVAWDKV QQKILPFQVL STRKRKDVEA 450
KDVKVRVCLF AFDIICHNGE RQINKSLRER RELLAQVTKP VAGEFQYAVE 500
LTTSSVEELQ KFLDQSVKDS CEGLMVKMLD GPESHYEPSK RSRNWLKLKK 550
DYLDGVGDSL DLCVLGAYYG RGKRTGTYGG FLLGCYNQDS GEFETCCKIG 600
TGFSDEMLQQ LYERFSKTTL DGPKATYVFD SSAEPDVWFE PTTLFEVLTA 650
DLSLSPVYKA GASTYDKGVS LRFPRFVRLR DDKSVEDATS SAQIVELYQD 700
QSHVA 705
Length:705
Mass (Da):79,333
Last modified:February 22, 2012 - v1
Checksum:i39C39F49AD819B0B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE616744 Genomic DNA. Translation: CCE91093.1.
RefSeqiXP_003680304.1. XM_003680256.1.

Genome annotation databases

GeneIDi11500428.
KEGGitdl:TDEL_0C02040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
HE616744 Genomic DNA. Translation: CCE91093.1 .
RefSeqi XP_003680304.1. XM_003680256.1.

3D structure databases

ProteinModelPortali G8ZRF1.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 11500428.
KEGGi tdl:TDEL_0C02040.

Phylogenomic databases

KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents."
    Gordon J.L., Armisen D., Proux-Wera E., OhEigeartaigh S.S., Byrne K.P., Wolfe K.H.
    Proc. Natl. Acad. Sci. U.S.A. 108:20024-20029(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866.

Entry informationi

Entry nameiG8ZRF1_TORDC
AccessioniPrimary (citable) accession number: G8ZRF1
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: November 13, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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