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Protein
Submitted name:

Hop-interacting protein THI113

Gene
N/A
Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Hop-interacting protein THI113Imported
OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)Imported
Taxonomic identifieri4081 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon

Family & Domainsi

Family and domain databases

InterProiIPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF14200. RicinB_lectin_2. 1 hit.
[Graphical view]
SUPFAMiSSF50370. SSF50370. 1 hit.

Sequencei

Sequence statusi: Complete.

G8Z279-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYPFGHHGH HHHHHRRDDD DDRREEFPPP GHRPPYDEPP PPQVGQVFHT
60 70 80 90 100
SHVGGPPPME PNYDRPHYPP PPMDDNYGRT EYTPPMDDIY GRTNYPPPPM
110 120 130 140 150
EENYGGSYNR PPPRSDYYDA PPPPPTSGYP SVEHVSHESE SGDRHHDRHR
160 170 180 190 200
FQPHVPTAFH HQTSDPELMD KPSFRVYTKA DTNYSLTIRD GKVVLASNDP
210 220 230 240 250
SDPFQHWYKD EKFSTKVKDE EGFPSFALVN KASGLAVKHS IGASHPVQLT
260 270 280 290 300
PYNPDVLDAS ILWTESRDVG DGYRAVRMVN NINLNLDAWN ADKEHGGVRD
310 320
GTTVCLWEWW KGDNRNQHWK IVRF
Length:324
Mass (Da):37,306
Last modified:February 22, 2012 - v1
Checksum:iC279D5A841064124
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GQ261257 mRNA. Translation: AEW69813.1.
RefSeqiNP_001265987.1. NM_001279058.1.
XP_010320521.1. XM_010322219.1.
UniGeneiLes.1207.

Genome annotation databases

GeneIDi101055530.
KEGGisly:101055530.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GQ261257 mRNA. Translation: AEW69813.1.
RefSeqiNP_001265987.1. NM_001279058.1.
XP_010320521.1. XM_010322219.1.
UniGeneiLes.1207.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi101055530.
KEGGisly:101055530.

Family and domain databases

InterProiIPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF14200. RicinB_lectin_2. 1 hit.
[Graphical view]
SUPFAMiSSF50370. SSF50370. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Pseudomonas syringae pv. tomato type III effector proteins binding partners identified in the defense-induced tomato proteome."
    Cunnac S., Nguyen H., Martin G.B., Collmer A.
    Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: LeafImported.

Entry informationi

Entry nameiG8Z279_SOLLC
AccessioniPrimary (citable) accession number: G8Z279
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: May 27, 2015
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.