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G8X976 (G8X976_FLACA) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 5. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G8X976 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: 2F49439F5ACE721A

FASTA23026,309
        10         20         30         40         50         60 
MKIISNKNNL VVLYEDNHLI VVNKRVGDIV QGDKTGDKPL SDVIKEYLKE KYNKPGEVFL 

        70         80         90        100        110        120 
GVVHRLDRPT TGIVLFAKTS KALSRLNDLF KNRETQKTYW AVVKKKPPQK EATLVHYLKR 

       130        140        150        160        170        180 
NPQKNTSKAY LKEVPDSKKA ILDYKIIKEL NNYFVLEINL HTGRHHQIRS QLSAIGCPIK 

       190        200        210        220        230 
GDLKYGFDRS NIDGGIHLHA RNLQLVHPVS KEIINITASV PEDIIWKAIE

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References

[1]"Complete genome sequence of Flavobacterium columnare ATCC 49512."
Tekedar H.C., Karsi A., Gillaspy A.F., Dyer D., Benton N.R., Zaitshik J., Vamenta S., Banes M.M., Gulsoy N., Aboko-Cole M., Waldbieser G.C., Lawrence M.L.
Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49512 / CIP 103533 / TG 44/87.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003222 Genomic DNA. Translation: AEW85127.1.
RefSeqYP_004940920.1. NC_016510.2.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEW85127; AEW85127; FCOL_01390.
GeneID11478080.
KEGGfco:FCOL_01390.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK06180.

Family and domain databases

InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
[Graphical view]
SUPFAMSSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG8X976_FLACA
AccessionPrimary (citable) accession number: G8X976
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: April 3, 2013
This is version 5 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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