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Protein
Submitted name:

DNA polymerase LigD ligase subunit

Gene

SCATT_54560

Organism
Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciSCAT1003195:GJCM-5537-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD ligase subunitImported
Gene namesi
Ordered Locus Names:SCATT_54560Imported
OrganismiStreptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057)Imported
Taxonomic identifieri1003195 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces
Proteomesi
  • UP000007842 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei115 – 135HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi1003195.SCAT_5457.

Structurei

3D structure databases

ProteinModelPortaliG8WVS0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini116 – 208DNA_LIGASE_A3InterPro annotationAdd BLAST93

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105DQE. Bacteria.
COG3285. LUCA.
OMAiSFMIVGY.

Family and domain databases

InterProiView protein in InterPro
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
PfamiView protein in Pfam
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiView protein in PROSITE
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.

Sequencei

Sequence statusi: Complete.

G8WVS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDAAHHRRPR PDDPVPDRVT PMLAVLSDRR HFDDTWVLER KLDGVRAIGF
60 70 80 90 100
RDGDTVRLAS RTGQRLENTY PEIVRALADQ PQRAFVVDGE IVALDDGRTS
110 120 130 140 150
FERLQRRMQL TRPSAALASG VAVTYFLFDL LHLAGHDTTG LPLRSRKELL
160 170 180 190 200
REAVRYTGPL RYTEHHTATG DAGQLLDAAC AQGWEGLIAK RADGRYQQRR
210 220 230 240 250
SSDWLKLKCL TAQEFVVGGY TEPAGSRAGF GALLLGYHQG GRLRYAGKVG
260 270 280 290 300
TGYDTATLRR LRGLLDERGL TEPPFAEPVR ERGAHWVRPD LVVQVAFTEW
310 320
TRDGRLRAPR YLGLRQDKRP ERVVREG
Length:327
Mass (Da):36,855
Last modified:February 22, 2012 - v1
Checksum:iC9364AB867E8681F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003219 Genomic DNA. Translation: AEW97827.1.

Genome annotation databases

EnsemblBacteriaiAEW97827; AEW97827; SCATT_54560.
KEGGiscy:SCATT_54560.
PATRICifig|1003195.29.peg.5441.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiG8WVS0_STREN
AccessioniPrimary (citable) accession number: G8WVS0
Entry historyiIntegrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: July 5, 2017
This is version 30 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported