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G8T9W3 (G8T9W3_NIAKG) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Niako_5068 EMBL AEW01307.1
OrganismNiastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) [Complete proteome] [HAMAP] EMBL AEW01307.1
Taxonomic identifier700598 [NCBI]
Taxonomic lineageBacteriaBacteroidetesSphingobacteriiaSphingobacterialesChitinophagaceaeNiastella

Protein attributes

Sequence length544 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
G8T9W3 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: 0CF421FFB8443D59

FASTA54462,209
        10         20         30         40         50         60 
MREFAQLIFT LGTSTKTNDK LQALSTYFAH ADEKDKVWVI ALFSGRRPRR TVSGTQLAVW 

        70         80         90        100        110        120 
CCELVDLPIW LFQECYHTVG DLSETIALLI PESSSSPSIG GGRGEANREG ASHPLHYYVE 

       130        140        150        160        170        180 
QFQQLEKAAE PEKKTFILQS WQELSSRERF VFNKLLSGTF RVGVSQKLMV NALAKTVQLE 

       190        200        210        220        230        240 
PSVIAHRISG NWDPATTSFD QLLSEQSTQT DHSKPYPFYL AYALEDPLQE LGEPADWQAE 

       250        260        270        280        290        300 
WKWDGIRGQI IKRNDQLFVW SRGEDLITEK FPEYTILQRK LENGTVIDGE ILPYKDGQVL 

       310        320        330        340        350        360 
NFNVLQTRIG RKNIAKKNLQ EAPVGLFAYD LLELSGEDIR HWALAERRAA LETLVTSLQL 

       370        380        390        400        410        420 
PWLQLSPIVT FSNWEELTTI RKQSRSLNSE GLMLKRRASA YQVGRKRGDW WKWKIDPLTI 

       430        440        450        460        470        480 
DAVMVYAQKG TGRRSNLYTD YTFAVKDGDK LVPFTKAYSG LTDKEFAQVD SFVKKNSLEK 

       490        500        510        520        530        540 
FGPVRTVKPE LVFEIAFEGI ATSNRHKSGV ALRFPRISRW RTDKLPNDIN TLEDLKKILE 


LYGK 

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References

[1]"The complete genome of Niastella koreensis GR20-10."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Davenport K., Saunders E., Detter J.C., Tapia R., Han C., Land M., Hauser L. expand/collapse author list , Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Pomrenke H., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17620 / KACC 11465 / GR20-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003178 Genomic DNA. Translation: AEW01307.1.
RefSeqYP_005010710.1. NC_016609.1.

3D structure databases

ProteinModelPortalG8T9W3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEW01307; AEW01307; Niako_5068.
GeneID11651017.
KEGGnko:Niako_5068.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAGQPYPFF.

Enzyme and pathway databases

BioCycNKOR700598:GHC3-5119-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG8T9W3_NIAKG
AccessionPrimary (citable) accession number: G8T9W3
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: October 16, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)