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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Niako_5068

Organism
Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNKOR700598:GHC3-5119-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Niako_5068Imported
OrganismiNiastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)Imported
Taxonomic identifieri700598 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesChitinophagaceaeNiastella
ProteomesiUP000005438 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi700598.Niako_5068.

Structurei

3D structure databases

ProteinModelPortaliG8T9W3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8T9W3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MREFAQLIFT LGTSTKTNDK LQALSTYFAH ADEKDKVWVI ALFSGRRPRR
60 70 80 90 100
TVSGTQLAVW CCELVDLPIW LFQECYHTVG DLSETIALLI PESSSSPSIG
110 120 130 140 150
GGRGEANREG ASHPLHYYVE QFQQLEKAAE PEKKTFILQS WQELSSRERF
160 170 180 190 200
VFNKLLSGTF RVGVSQKLMV NALAKTVQLE PSVIAHRISG NWDPATTSFD
210 220 230 240 250
QLLSEQSTQT DHSKPYPFYL AYALEDPLQE LGEPADWQAE WKWDGIRGQI
260 270 280 290 300
IKRNDQLFVW SRGEDLITEK FPEYTILQRK LENGTVIDGE ILPYKDGQVL
310 320 330 340 350
NFNVLQTRIG RKNIAKKNLQ EAPVGLFAYD LLELSGEDIR HWALAERRAA
360 370 380 390 400
LETLVTSLQL PWLQLSPIVT FSNWEELTTI RKQSRSLNSE GLMLKRRASA
410 420 430 440 450
YQVGRKRGDW WKWKIDPLTI DAVMVYAQKG TGRRSNLYTD YTFAVKDGDK
460 470 480 490 500
LVPFTKAYSG LTDKEFAQVD SFVKKNSLEK FGPVRTVKPE LVFEIAFEGI
510 520 530 540
ATSNRHKSGV ALRFPRISRW RTDKLPNDIN TLEDLKKILE LYGK
Length:544
Mass (Da):62,209
Last modified:February 22, 2012 - v1
Checksum:i0CF421FFB8443D59
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003178 Genomic DNA. Translation: AEW01307.1.
RefSeqiWP_014221218.1. NC_016609.1.
YP_005010710.1. NC_016609.1.

Genome annotation databases

EnsemblBacteriaiAEW01307; AEW01307; Niako_5068.
KEGGinko:Niako_5068.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003178 Genomic DNA. Translation: AEW01307.1.
RefSeqiWP_014221218.1. NC_016609.1.
YP_005010710.1. NC_016609.1.

3D structure databases

ProteinModelPortaliG8T9W3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi700598.Niako_5068.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEW01307; AEW01307; Niako_5068.
KEGGinko:Niako_5068.

Phylogenomic databases

KOiK10747.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciNKOR700598:GHC3-5119-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17620 / KACC 11465 / GR20-10Imported.

Entry informationi

Entry nameiG8T9W3_NIAKG
AccessioniPrimary (citable) accession number: G8T9W3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: June 24, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.