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G8T6U3

- G8T6U3_NIAKG

UniProt

G8T6U3 - G8T6U3_NIAKG

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Protein
Submitted name:

DNA ligase D

Gene

Niako_1577

Organism
Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNKOR700598:GHC3-1596-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Niako_1577Imported
OrganismiNiastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)Imported
Taxonomic identifieri700598 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesChitinophagaceaeNiastella
ProteomesiUP000005438: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8T6U3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSLATYKKKR SFNQTPEPEG KKPAGKKTAV SSQLHFVVQK HDATRLHYDF
60 70 80 90 100
RLEMEGVLKS WAVPKGPSMN PADKRLAMMV EDHPYDYKDF EGIIPEGNYG
110 120 130 140 150
AGTVIVWDEG TYEPIEPFDD PKKAEKHLLE QLRKGSLKIV LHGQKLKGEF
160 170 180 190 200
ALVQIKSSED NAWLLIKHND KYATQTDVTK KAKSVQSGMK LEQVAKESTH
210 220 230 240 250
EWVSNKKSTT KKKSSAAKKS PAQSAVASKK QPAKKKVPQA IDGLLRKGKK
260 270 280 290 300
QAMPSGIIPM LATLTDNSFD DKNWIFEIKY DGYRALSYIN DSEVTIMSRK
310 320 330 340 350
DLSFNKKFPP VAEALKQLEL EAILDGEIVA LNEEGRSDFQ LLQQWQKNGE
360 370 380 390 400
GELVYYVFDL LWLNGYNLMH LPLVERKEIL QQILPEHPMI RYSDHIEQKG
410 420 430 440 450
RQFFEVANKQ GLEGIMAKER DSAYTPKIRT RQWLKIKTVQ RQEVVIAGFT
460 470 480 490 500
ETRGSRSHFG ALVLGVYEKD KLIYVGHTGS GFTEKSLAAV YKKLQPLIID
510 520 530 540 550
KSPFATKPKT NMPCTWIKPV LVGEVKFSEW TKDNILRQPI FVGLREDKNA
560 570 580 590 600
KDVHKENAVH NSTAVEEGEA ETRSTKKQSS QKMPTKKAAK SSKPKAKSKI
610 620 630 640 650
QNRKMEANDK RVARSVNITS EKTLLNDSDK EQVVTIDKKE LTFTNLDKIY
660 670 680 690 700
WPADKYTKRD LINYYDQMAA FILPYLKDRP QSMNRHPNGI DKPGFYQKDV
710 720 730 740 750
SGGKVADWLE KHDYLSESDG ETKQYLVCTD EASLLYMANL GCIEMNPWHS
760 770 780 790 800
TTKKPENPSW CVIDLDPGNI SFDKVIEAAQ VIKQLTDELG IDTYCKTSGS
810 820 830 840 850
TGLHIYIPLA AAYDYDQSRQ LAELIVTMAY NEMPSFTSLE RSPAKRKNKI
860 870 880 890 900
YLDYLQNRTI QTIAAPYSLR PKPGATASAP LHWEEVKKGL AIQDFTIENM
910 920 930
YSRAKEVGDI FKPVLGKGIN LKKVLTKINS MQSK
Length:934
Mass (Da):105,997
Last modified:February 22, 2012 - v1
Checksum:i3D02F5F475119273
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003178 Genomic DNA. Translation: AEV97946.1.
RefSeqiYP_005007350.1. NC_016609.1.

Genome annotation databases

EnsemblBacteriaiAEV97946; AEV97946; Niako_1577.
GeneIDi11655052.
KEGGinko:Niako_1577.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003178 Genomic DNA. Translation: AEV97946.1 .
RefSeqi YP_005007350.1. NC_016609.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEV97946 ; AEV97946 ; Niako_1577 .
GeneIDi 11655052.
KEGGi nko:Niako_1577.

Phylogenomic databases

KOi K01971.
OMAi DWTIRSI.

Enzyme and pathway databases

BioCyci NKOR700598:GHC3-1596-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17620 / KACC 11465 / GR20-10Imported.

Entry informationi

Entry nameiG8T6U3_NIAKG
AccessioniPrimary (citable) accession number: G8T6U3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: October 1, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3