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G8T6U3 (G8T6U3_NIAKG) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL AEV97946.1
Gene names
Ordered Locus Names:Niako_1577 EMBL AEV97946.1
OrganismNiastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) [Complete proteome] [HAMAP]
Taxonomic identifier700598 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Chitinophagaceae › Niastella ›

Protein attributes

Sequence length934 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
G8T6U3 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: 3D02F5F475119273

FASTA934105,997
        10         20         30         40         50         60 
MSLATYKKKR SFNQTPEPEG KKPAGKKTAV SSQLHFVVQK HDATRLHYDF RLEMEGVLKS 

        70         80         90        100        110        120 
WAVPKGPSMN PADKRLAMMV EDHPYDYKDF EGIIPEGNYG AGTVIVWDEG TYEPIEPFDD 

       130        140        150        160        170        180 
PKKAEKHLLE QLRKGSLKIV LHGQKLKGEF ALVQIKSSED NAWLLIKHND KYATQTDVTK 

       190        200        210        220        230        240 
KAKSVQSGMK LEQVAKESTH EWVSNKKSTT KKKSSAAKKS PAQSAVASKK QPAKKKVPQA 

       250        260        270        280        290        300 
IDGLLRKGKK QAMPSGIIPM LATLTDNSFD DKNWIFEIKY DGYRALSYIN DSEVTIMSRK 

       310        320        330        340        350        360 
DLSFNKKFPP VAEALKQLEL EAILDGEIVA LNEEGRSDFQ LLQQWQKNGE GELVYYVFDL 

       370        380        390        400        410        420 
LWLNGYNLMH LPLVERKEIL QQILPEHPMI RYSDHIEQKG RQFFEVANKQ GLEGIMAKER 

       430        440        450        460        470        480 
DSAYTPKIRT RQWLKIKTVQ RQEVVIAGFT ETRGSRSHFG ALVLGVYEKD KLIYVGHTGS 

       490        500        510        520        530        540 
GFTEKSLAAV YKKLQPLIID KSPFATKPKT NMPCTWIKPV LVGEVKFSEW TKDNILRQPI 

       550        560        570        580        590        600 
FVGLREDKNA KDVHKENAVH NSTAVEEGEA ETRSTKKQSS QKMPTKKAAK SSKPKAKSKI 

       610        620        630        640        650        660 
QNRKMEANDK RVARSVNITS EKTLLNDSDK EQVVTIDKKE LTFTNLDKIY WPADKYTKRD 

       670        680        690        700        710        720 
LINYYDQMAA FILPYLKDRP QSMNRHPNGI DKPGFYQKDV SGGKVADWLE KHDYLSESDG 

       730        740        750        760        770        780 
ETKQYLVCTD EASLLYMANL GCIEMNPWHS TTKKPENPSW CVIDLDPGNI SFDKVIEAAQ 

       790        800        810        820        830        840 
VIKQLTDELG IDTYCKTSGS TGLHIYIPLA AAYDYDQSRQ LAELIVTMAY NEMPSFTSLE 

       850        860        870        880        890        900 
RSPAKRKNKI YLDYLQNRTI QTIAAPYSLR PKPGATASAP LHWEEVKKGL AIQDFTIENM 

       910        920        930 
YSRAKEVGDI FKPVLGKGIN LKKVLTKINS MQSK

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References

[1]"The complete genome of Niastella koreensis GR20-10."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Davenport K., Saunders E., Detter J.C., Tapia R., Han C., Land M., Hauser L. expand/collapse author list , Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Pomrenke H., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17620 / KACC 11465 / GR20-10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003178 Genomic DNA. Translation: AEV97946.1.
RefSeqYP_005007350.1. NC_016609.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEV97946; AEV97946; Niako_1577.
GeneID11655052.
KEGGnko:Niako_1577.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycNKOR700598:GHC3-1596-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG8T6U3_NIAKG
AccessionPrimary (citable) accession number: G8T6U3
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: May 29, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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