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G8T6U3

- G8T6U3_NIAKG

UniProt

G8T6U3 - G8T6U3_NIAKG

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Protein
Submitted name: DNA ligase D
Gene
Niako_1577
Organism
Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNKOR700598:GHC3-1596-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Niako_1577Imported
OrganismiNiastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)Imported
Taxonomic identifieri700598 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesChitinophagaceaeNiastella
ProteomesiUP000005438: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDWTIRSI.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8T6U3-1 [UniParc]FASTAAdd to Basket

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MSLATYKKKR SFNQTPEPEG KKPAGKKTAV SSQLHFVVQK HDATRLHYDF    50
RLEMEGVLKS WAVPKGPSMN PADKRLAMMV EDHPYDYKDF EGIIPEGNYG 100
AGTVIVWDEG TYEPIEPFDD PKKAEKHLLE QLRKGSLKIV LHGQKLKGEF 150
ALVQIKSSED NAWLLIKHND KYATQTDVTK KAKSVQSGMK LEQVAKESTH 200
EWVSNKKSTT KKKSSAAKKS PAQSAVASKK QPAKKKVPQA IDGLLRKGKK 250
QAMPSGIIPM LATLTDNSFD DKNWIFEIKY DGYRALSYIN DSEVTIMSRK 300
DLSFNKKFPP VAEALKQLEL EAILDGEIVA LNEEGRSDFQ LLQQWQKNGE 350
GELVYYVFDL LWLNGYNLMH LPLVERKEIL QQILPEHPMI RYSDHIEQKG 400
RQFFEVANKQ GLEGIMAKER DSAYTPKIRT RQWLKIKTVQ RQEVVIAGFT 450
ETRGSRSHFG ALVLGVYEKD KLIYVGHTGS GFTEKSLAAV YKKLQPLIID 500
KSPFATKPKT NMPCTWIKPV LVGEVKFSEW TKDNILRQPI FVGLREDKNA 550
KDVHKENAVH NSTAVEEGEA ETRSTKKQSS QKMPTKKAAK SSKPKAKSKI 600
QNRKMEANDK RVARSVNITS EKTLLNDSDK EQVVTIDKKE LTFTNLDKIY 650
WPADKYTKRD LINYYDQMAA FILPYLKDRP QSMNRHPNGI DKPGFYQKDV 700
SGGKVADWLE KHDYLSESDG ETKQYLVCTD EASLLYMANL GCIEMNPWHS 750
TTKKPENPSW CVIDLDPGNI SFDKVIEAAQ VIKQLTDELG IDTYCKTSGS 800
TGLHIYIPLA AAYDYDQSRQ LAELIVTMAY NEMPSFTSLE RSPAKRKNKI 850
YLDYLQNRTI QTIAAPYSLR PKPGATASAP LHWEEVKKGL AIQDFTIENM 900
YSRAKEVGDI FKPVLGKGIN LKKVLTKINS MQSK 934
Length:934
Mass (Da):105,997
Last modified:February 22, 2012 - v1
Checksum:i3D02F5F475119273
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003178 Genomic DNA. Translation: AEV97946.1.
RefSeqiYP_005007350.1. NC_016609.1.

Genome annotation databases

EnsemblBacteriaiAEV97946; AEV97946; Niako_1577.
GeneIDi11655052.
KEGGinko:Niako_1577.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003178 Genomic DNA. Translation: AEV97946.1 .
RefSeqi YP_005007350.1. NC_016609.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEV97946 ; AEV97946 ; Niako_1577 .
GeneIDi 11655052.
KEGGi nko:Niako_1577.

Phylogenomic databases

KOi K01971.
OMAi DWTIRSI.

Enzyme and pathway databases

BioCyci NKOR700598:GHC3-1596-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17620 / KACC 11465 / GR20-10.

Entry informationi

Entry nameiG8T6U3_NIAKG
AccessioniPrimary (citable) accession number: G8T6U3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: May 14, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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