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G8T6U3

- G8T6U3_NIAKG

UniProt

G8T6U3 - G8T6U3_NIAKG

Protein
Submitted name:

DNA ligase D

Gene

Niako_1577

Organism
Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 13 (01 Oct 2014)
      Sequence version 1 (22 Feb 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNKOR700598:GHC3-1596-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Niako_1577Imported
    OrganismiNiastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10)Imported
    Taxonomic identifieri700598 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesChitinophagaceaeNiastella
    ProteomesiUP000005438: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiDWTIRSI.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G8T6U3-1 [UniParc]FASTAAdd to Basket

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    MSLATYKKKR SFNQTPEPEG KKPAGKKTAV SSQLHFVVQK HDATRLHYDF    50
    RLEMEGVLKS WAVPKGPSMN PADKRLAMMV EDHPYDYKDF EGIIPEGNYG 100
    AGTVIVWDEG TYEPIEPFDD PKKAEKHLLE QLRKGSLKIV LHGQKLKGEF 150
    ALVQIKSSED NAWLLIKHND KYATQTDVTK KAKSVQSGMK LEQVAKESTH 200
    EWVSNKKSTT KKKSSAAKKS PAQSAVASKK QPAKKKVPQA IDGLLRKGKK 250
    QAMPSGIIPM LATLTDNSFD DKNWIFEIKY DGYRALSYIN DSEVTIMSRK 300
    DLSFNKKFPP VAEALKQLEL EAILDGEIVA LNEEGRSDFQ LLQQWQKNGE 350
    GELVYYVFDL LWLNGYNLMH LPLVERKEIL QQILPEHPMI RYSDHIEQKG 400
    RQFFEVANKQ GLEGIMAKER DSAYTPKIRT RQWLKIKTVQ RQEVVIAGFT 450
    ETRGSRSHFG ALVLGVYEKD KLIYVGHTGS GFTEKSLAAV YKKLQPLIID 500
    KSPFATKPKT NMPCTWIKPV LVGEVKFSEW TKDNILRQPI FVGLREDKNA 550
    KDVHKENAVH NSTAVEEGEA ETRSTKKQSS QKMPTKKAAK SSKPKAKSKI 600
    QNRKMEANDK RVARSVNITS EKTLLNDSDK EQVVTIDKKE LTFTNLDKIY 650
    WPADKYTKRD LINYYDQMAA FILPYLKDRP QSMNRHPNGI DKPGFYQKDV 700
    SGGKVADWLE KHDYLSESDG ETKQYLVCTD EASLLYMANL GCIEMNPWHS 750
    TTKKPENPSW CVIDLDPGNI SFDKVIEAAQ VIKQLTDELG IDTYCKTSGS 800
    TGLHIYIPLA AAYDYDQSRQ LAELIVTMAY NEMPSFTSLE RSPAKRKNKI 850
    YLDYLQNRTI QTIAAPYSLR PKPGATASAP LHWEEVKKGL AIQDFTIENM 900
    YSRAKEVGDI FKPVLGKGIN LKKVLTKINS MQSK 934
    Length:934
    Mass (Da):105,997
    Last modified:February 22, 2012 - v1
    Checksum:i3D02F5F475119273
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003178 Genomic DNA. Translation: AEV97946.1.
    RefSeqiYP_005007350.1. NC_016609.1.

    Genome annotation databases

    EnsemblBacteriaiAEV97946; AEV97946; Niako_1577.
    GeneIDi11655052.
    KEGGinko:Niako_1577.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003178 Genomic DNA. Translation: AEV97946.1 .
    RefSeqi YP_005007350.1. NC_016609.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEV97946 ; AEV97946 ; Niako_1577 .
    GeneIDi 11655052.
    KEGGi nko:Niako_1577.

    Phylogenomic databases

    KOi K01971.
    OMAi DWTIRSI.

    Enzyme and pathway databases

    BioCyci NKOR700598:GHC3-1596-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 17620 / KACC 11465 / GR20-10Imported.

    Entry informationi

    Entry nameiG8T6U3_NIAKG
    AccessioniPrimary (citable) accession number: G8T6U3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 22, 2012
    Last sequence update: February 22, 2012
    Last modified: October 1, 2014
    This is version 13 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3