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Protein
Submitted name:

DNA ligase (ATP)

Gene

ligD

Organism
Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP134676:GL7H-1062-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:ACPL_1154Imported
OrganismiActinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110)Imported
Taxonomic identifieri134676 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicromonosporalesMicromonosporaceaeActinoplanes
Proteomesi
  • UP000005440 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi134676.ACPL_1154.

Structurei

3D structure databases

ProteinModelPortaliG8RZ48.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini38 – 13699LigD_NInterPro annotationAdd
BLAST
Domaini178 – 343166DNA_LIGASE_A3InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4107TKW. Bacteria.
COG1793. LUCA.
KOiK01971.
OMAiLAKHTED.
OrthoDBiPOG091H0AZ9.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

G8RZ48-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPDRLDEYRR KRDPARTPEP VPQSPPAPRE PGRRFVIQQH HARSLHWDVR
60 70 80 90 100
LERDGVLVSF AVPRGLPRDQ ARNHLAKHTE DHPLEYLDFA GEIPAGEYGG
110 120 130 140 150
GRMTIFDAGT YETGKWRSDE ISVTFHGDRT KGRYVFFQTD GADWMVRRMD
160 170 180 190 200
PPEPGWEPMP ADLSPMLATR AGTLPPDDAD WGYELAWGGQ RVLTYLSGGR
210 220 230 240 250
VRLSGPGGKE LISLFPEVRA LGPALAPVEA IFDGELVAFD GTRPAADQTA
260 270 280 290 300
RTARTRNPRP VQLLLYDLLW LDGHRTTELL RYAERRELLD DLAPAGPHWQ
310 320 330 340
TPPYFPGGGR FALDAARSQG LSGVVAKRLD SPYLPGRTTR LWLDIEVS
Length:348
Mass (Da):39,040
Last modified:February 22, 2012 - v1
Checksum:i5EC12FD1BADA077E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003170 Genomic DNA. Translation: AEV82051.1.
RefSeqiWP_014688124.1. NC_017803.1.

Genome annotation databases

EnsemblBacteriaiAEV82051; AEV82051; ACPL_1154.
KEGGiase:ACPL_1154.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003170 Genomic DNA. Translation: AEV82051.1.
RefSeqiWP_014688124.1. NC_017803.1.

3D structure databases

ProteinModelPortaliG8RZ48.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi134676.ACPL_1154.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEV82051; AEV82051; ACPL_1154.
KEGGiase:ACPL_1154.

Phylogenomic databases

eggNOGiENOG4107TKW. Bacteria.
COG1793. LUCA.
KOiK01971.
OMAiLAKHTED.
OrthoDBiPOG091H0AZ9.

Enzyme and pathway databases

BioCyciASP134676:GL7H-1062-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiG8RZ48_ACTS5
AccessioniPrimary (citable) accession number: G8RZ48
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: September 7, 2016
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.