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Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

MycrhN_3288

Organism
Mycobacterium rhodesiae (strain NBB3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMRHO710685:GI37-3281-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D/DNA polymerase LigDImported
Gene namesi
Ordered Locus Names:MycrhN_3288Imported
OrganismiMycobacterium rhodesiae (strain NBB3)Imported
Taxonomic identifieri710685 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000005442 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG8RNW2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8RNW2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVVDQFGRVK LTNPDKVLYP ATELRPKAVT KQEVFDYYVR IAEVMVPHIA
60 70 80 90 100
GRAVTRKRWP NGVDEPSFFE KQLASSAPDW LERGSIAHKS GTTTYPIINS
110 120 130 140 150
AEGLAWIAQQ ASLEVHVPQW RFVSTWTRDE GAEQTPGPAT RVVFDLDPGE
160 170 180 190 200
GVTFRQLCEV AHEVRELIAG MGLTTFPLTS GSKGLHLYVP LDEPISSRGA
210 220 230 240 250
SVLAKRVAQQ LEQAMPKRVT ATMTKSLRAG KVFLDWSQNN GNKTTIAPYS
260 270 280 290 300
LRGRDEPTVA APRTWDEIED PELRHLRFDE VLERVERDGD LLAQMDTDAP
310 320 330 340 350
VADALTTYRS MRDAGKTPEP VPHVAPTPGN DDFFVIQEHH ARRLHYDFRL
360 370 380 390 400
ERNGVLVSWA VPKNLPDTPS VNHLAVHTED HPFEYGSFEG EIPKGEYGGG
410 420 430 440 450
KVVIWDTGTY ETEKFRDHAP DGPAKGGEVI ITLHGKKIDG RYALIQTDGK
460 470 480 490 500
NWLAHRMKEQ ANPQASDLAP MLSTEGSIAK LTSAQWAFEG KWDGYRVLVD
510 520 530 540 550
ANHGKLNVRS RRGRDVTGEY PQFASLAADL ADHHVILDGE AVALDKHGVP
560 570 580 590 600
SFSEMQNRAR STRVEFWAFD ILYLDGRSLL KAKYSDRRRL LEALADGGNL
610 620 630 640 650
IVPDPLPGDG PEALEHAREH RWEGVVAKKL DATYQPGRRS KSWIKDKIWN
660 670 680 690 700
TQEVVIGGWR KGDGGRSSGI GALMLGIPSP DNPEGGLQFV GRVGTGFTEK
710 720 730 740 750
ELSKLKGILE PLATEESPFN ARLSTIDARG VTFVRPELVG EVRYSERTSD
760 770
DRLRQPSWRG LRPDKEPSEI VWE
Length:773
Mass (Da):86,157
Last modified:February 22, 2012 - v1
Checksum:i859C6EC2AA3CFD17
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003169 Genomic DNA. Translation: AEV73813.1.
RefSeqiYP_005001028.1. NC_016604.1.

Genome annotation databases

EnsemblBacteriaiAEV73813; AEV73813; MycrhN_3288.
KEGGimrh:MycrhN_3288.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003169 Genomic DNA. Translation: AEV73813.1.
RefSeqiYP_005001028.1. NC_016604.1.

3D structure databases

ProteinModelPortaliG8RNW2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEV73813; AEV73813; MycrhN_3288.
KEGGimrh:MycrhN_3288.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciMRHO710685:GI37-3281-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBB3Imported.

Entry informationi

Entry nameiG8RNW2_MYCRN
AccessioniPrimary (citable) accession number: G8RNW2
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: April 29, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.