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G8RNW2 (G8RNW2_MYCRN) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D/DNA polymerase LigD EMBL AEV73813.1
Gene names
Ordered Locus Names:MycrhN_3288 EMBL AEV73813.1
OrganismMycobacterium rhodesiae (strain NBB3) [Complete proteome] [HAMAP]
Taxonomic identifier710685 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium ›

Protein attributes

Sequence length773 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEV73813.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
G8RNW2 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: 859C6EC2AA3CFD17

FASTA77386,157
        10         20         30         40         50         60 
MVVDQFGRVK LTNPDKVLYP ATELRPKAVT KQEVFDYYVR IAEVMVPHIA GRAVTRKRWP 

        70         80         90        100        110        120 
NGVDEPSFFE KQLASSAPDW LERGSIAHKS GTTTYPIINS AEGLAWIAQQ ASLEVHVPQW 

       130        140        150        160        170        180 
RFVSTWTRDE GAEQTPGPAT RVVFDLDPGE GVTFRQLCEV AHEVRELIAG MGLTTFPLTS 

       190        200        210        220        230        240 
GSKGLHLYVP LDEPISSRGA SVLAKRVAQQ LEQAMPKRVT ATMTKSLRAG KVFLDWSQNN 

       250        260        270        280        290        300 
GNKTTIAPYS LRGRDEPTVA APRTWDEIED PELRHLRFDE VLERVERDGD LLAQMDTDAP 

       310        320        330        340        350        360 
VADALTTYRS MRDAGKTPEP VPHVAPTPGN DDFFVIQEHH ARRLHYDFRL ERNGVLVSWA 

       370        380        390        400        410        420 
VPKNLPDTPS VNHLAVHTED HPFEYGSFEG EIPKGEYGGG KVVIWDTGTY ETEKFRDHAP 

       430        440        450        460        470        480 
DGPAKGGEVI ITLHGKKIDG RYALIQTDGK NWLAHRMKEQ ANPQASDLAP MLSTEGSIAK 

       490        500        510        520        530        540 
LTSAQWAFEG KWDGYRVLVD ANHGKLNVRS RRGRDVTGEY PQFASLAADL ADHHVILDGE 

       550        560        570        580        590        600 
AVALDKHGVP SFSEMQNRAR STRVEFWAFD ILYLDGRSLL KAKYSDRRRL LEALADGGNL 

       610        620        630        640        650        660 
IVPDPLPGDG PEALEHAREH RWEGVVAKKL DATYQPGRRS KSWIKDKIWN TQEVVIGGWR 

       670        680        690        700        710        720 
KGDGGRSSGI GALMLGIPSP DNPEGGLQFV GRVGTGFTEK ELSKLKGILE PLATEESPFN 

       730        740        750        760        770 
ARLSTIDARG VTFVRPELVG EVRYSERTSD DRLRQPSWRG LRPDKEPSEI VWE

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References

[1]"Complete sequence of Mycobacterium rhodesiae NBB3."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Gu W., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Mattes T. expand/collapse author list , Holmes A., Rutledge P., Paulsen I., Coleman N., Woyke T.
Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBB3 EMBL AEV73813.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003169 Genomic DNA. Translation: AEV73813.1.
RefSeqYP_005001028.1. NC_016604.1.

3D structure databases

ProteinModelPortalG8RNW2.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEV73813; AEV73813; MycrhN_3288.
GeneID11646028.
KEGGmrh:MycrhN_3288.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycMRHO710685:GI37-3281-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG8RNW2_MYCRN
AccessionPrimary (citable) accession number: G8RNW2
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: May 29, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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