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Protein
Submitted name:

LigD

Gene

ligD2

Organism
Pseudomonas fluorescens F113
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported, Oxidoreductase, PeroxidaseImported

Enzyme and pathway databases

BioCyciPFLU1114970:GJXA-2955-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigDImported (EC:1.11.1.9Imported, EC:6.5.1.1Imported)
Gene namesi
Name:ligD2Imported
ORF Names:PSF113_2933Imported
OrganismiPseudomonas fluorescens F113Imported
Taxonomic identifieri1114970 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000005437 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi1114970.PSF113_2933.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8Q248-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRKTLDDYN RMRDFAATPE PAAKRSRKSA RTAHALQFCI QKHDASRLHY
60 70 80 90 100
DFRLELDGAL KSWAVPKGPS LDPKAKRLAV HVEDHPLDYA TFEGNIPEGH
110 120 130 140 150
YGAGDVIVWD RGVWIPQDDP HEAYEKGRLK FELQGEKLSG LWNLVRTHMP
160 170 180 190 200
GKQEQWFLIK HQDQAARPES EYDVVQAEPN SVLSDRTLVP KRRGKAATAK
210 220 230 240 250
ALKQPEKAVQ AKSPRRAAKT TLSGAVAGPL PETLKPELAT LVDSAPDGEW
260 270 280 290 300
LYEIKFDGYR VMARIENGGV KLLTRNGHDW THKLPRQAEA LAALGLESAW
310 320 330 340 350
LDGEMVVAND QGVPDFQALQ NAFEAGSSGK IAYYLFDMPY LNGMDLRKVP
360 370 380 390 400
VQERRAALAA VLEPNQSPLL RFSDAFEETP EALLNSACQM QMEGLIGKRI
410 420 430 440 450
GSAYVSRRSN DWIKLKCKNR QEFVVVGFSD PKGARSAFGA LLLGLHDADS
460 470 480 490 500
GQLRYAGKVG TGFNETTLKS IYQRLLPLER KEPAVANPPT GYEAKGVHWL
510 520 530 540 550
EPTLLAEVAF AEMTKDGSVR HAVFHGLRND KPAKEITQEL AKPMKKTAAT
560 570 580 590 600
KKTKAKDEPG ATPAKTKSKA KAPALDGKVR ITHPERVIDA SSGTTKLQLA
610 620 630 640 650
EYYASVAEFI LPELADRPAA LVRAPDGIAG ELFFQKNAER LAIPGITSLD
660 670 680 690 700
KALTGQPVMI INNAEALIGA VQMSTVELHT WNATSVDLDK PDRFVLDLDP
710 720 730 740 750
DPALPWKSMV EATQLTLSVL DELGLKAFLK TSGGKGIHVV VPLTRKLGWD
760 770 780 790 800
EVKGFSHAIV SHMAKLLPDR FSAVSGPKNR VGRIFIDYLR NGLGATTICA
810 820 830 840 850
YAARTREGLP VSVPVFREEV AELKGANLWN VHNVHERLAQ VGHEPWAGLK
860 870
RTRQSITAEM RRRIGMRETD K
Length:871
Mass (Da):96,171
Last modified:February 22, 2012 - v1
Checksum:iF2FE13F8D457EFD0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003150 Genomic DNA. Translation: AEV62937.1.
RefSeqiWP_014338381.1. NC_016830.1.
YP_005208332.1. NC_016830.1.

Genome annotation databases

EnsemblBacteriaiAEV62937; AEV62937; PSF113_2933.
GeneIDi11831028.
KEGGipfe:PSF113_2933.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003150 Genomic DNA. Translation: AEV62937.1.
RefSeqiWP_014338381.1. NC_016830.1.
YP_005208332.1. NC_016830.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1114970.PSF113_2933.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEV62937; AEV62937; PSF113_2933.
GeneIDi11831028.
KEGGipfe:PSF113_2933.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciPFLU1114970:GJXA-2955-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: F113Imported.

Entry informationi

Entry nameiG8Q248_PSEFL
AccessioniPrimary (citable) accession number: G8Q248
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: June 24, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.