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G8Q248

- G8Q248_PSEFL

UniProt

G8Q248 - G8Q248_PSEFL

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Protein
Submitted name:

LigD

Gene
ligD2, PSF113_2933
Organism
Pseudomonas fluorescens F113
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro
  4. glutathione peroxidase activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported, Oxidoreductase, PeroxidaseImported

Enzyme and pathway databases

BioCyciPFLU1114970:GJXA-2955-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
LigDImported (EC:1.11.1.9Imported, EC:6.5.1.1Imported)
Gene namesi
Name:ligD2Imported
ORF Names:PSF113_2933Imported
OrganismiPseudomonas fluorescens F113Imported
Taxonomic identifieri1114970 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000005437: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8Q248-1 [UniParc]FASTAAdd to Basket

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MSRKTLDDYN RMRDFAATPE PAAKRSRKSA RTAHALQFCI QKHDASRLHY    50
DFRLELDGAL KSWAVPKGPS LDPKAKRLAV HVEDHPLDYA TFEGNIPEGH 100
YGAGDVIVWD RGVWIPQDDP HEAYEKGRLK FELQGEKLSG LWNLVRTHMP 150
GKQEQWFLIK HQDQAARPES EYDVVQAEPN SVLSDRTLVP KRRGKAATAK 200
ALKQPEKAVQ AKSPRRAAKT TLSGAVAGPL PETLKPELAT LVDSAPDGEW 250
LYEIKFDGYR VMARIENGGV KLLTRNGHDW THKLPRQAEA LAALGLESAW 300
LDGEMVVAND QGVPDFQALQ NAFEAGSSGK IAYYLFDMPY LNGMDLRKVP 350
VQERRAALAA VLEPNQSPLL RFSDAFEETP EALLNSACQM QMEGLIGKRI 400
GSAYVSRRSN DWIKLKCKNR QEFVVVGFSD PKGARSAFGA LLLGLHDADS 450
GQLRYAGKVG TGFNETTLKS IYQRLLPLER KEPAVANPPT GYEAKGVHWL 500
EPTLLAEVAF AEMTKDGSVR HAVFHGLRND KPAKEITQEL AKPMKKTAAT 550
KKTKAKDEPG ATPAKTKSKA KAPALDGKVR ITHPERVIDA SSGTTKLQLA 600
EYYASVAEFI LPELADRPAA LVRAPDGIAG ELFFQKNAER LAIPGITSLD 650
KALTGQPVMI INNAEALIGA VQMSTVELHT WNATSVDLDK PDRFVLDLDP 700
DPALPWKSMV EATQLTLSVL DELGLKAFLK TSGGKGIHVV VPLTRKLGWD 750
EVKGFSHAIV SHMAKLLPDR FSAVSGPKNR VGRIFIDYLR NGLGATTICA 800
YAARTREGLP VSVPVFREEV AELKGANLWN VHNVHERLAQ VGHEPWAGLK 850
RTRQSITAEM RRRIGMRETD K 871
Length:871
Mass (Da):96,171
Last modified:February 22, 2012 - v1
Checksum:iF2FE13F8D457EFD0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003150 Genomic DNA. Translation: AEV62937.1.
RefSeqiWP_014338381.1. NC_016830.1.
YP_005208332.1. NC_016830.1.

Genome annotation databases

EnsemblBacteriaiAEV62937; AEV62937; PSF113_2933.
GeneIDi11831028.
KEGGipfe:PSF113_2933.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003150 Genomic DNA. Translation: AEV62937.1 .
RefSeqi WP_014338381.1. NC_016830.1.
YP_005208332.1. NC_016830.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEV62937 ; AEV62937 ; PSF113_2933 .
GeneIDi 11831028.
KEGGi pfe:PSF113_2933.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PFLU1114970:GJXA-2955-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: F113Imported.

Entry informationi

Entry nameiG8Q248_PSEFL
AccessioniPrimary (citable) accession number: G8Q248
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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