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G8Q248

- G8Q248_PSEFL

UniProt

G8Q248 - G8Q248_PSEFL

Protein
Submitted name:

LigD

Gene

ligD2

Organism
Pseudomonas fluorescens F113
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (22 Feb 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro
    4. glutathione peroxidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported, Oxidoreductase, PeroxidaseImported

    Enzyme and pathway databases

    BioCyciPFLU1114970:GJXA-2955-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    LigDImported (EC:1.11.1.9Imported, EC:6.5.1.1Imported)
    Gene namesi
    Name:ligD2Imported
    ORF Names:PSF113_2933Imported
    OrganismiPseudomonas fluorescens F113Imported
    Taxonomic identifieri1114970 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000005437: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G8Q248-1 [UniParc]FASTAAdd to Basket

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    MSRKTLDDYN RMRDFAATPE PAAKRSRKSA RTAHALQFCI QKHDASRLHY    50
    DFRLELDGAL KSWAVPKGPS LDPKAKRLAV HVEDHPLDYA TFEGNIPEGH 100
    YGAGDVIVWD RGVWIPQDDP HEAYEKGRLK FELQGEKLSG LWNLVRTHMP 150
    GKQEQWFLIK HQDQAARPES EYDVVQAEPN SVLSDRTLVP KRRGKAATAK 200
    ALKQPEKAVQ AKSPRRAAKT TLSGAVAGPL PETLKPELAT LVDSAPDGEW 250
    LYEIKFDGYR VMARIENGGV KLLTRNGHDW THKLPRQAEA LAALGLESAW 300
    LDGEMVVAND QGVPDFQALQ NAFEAGSSGK IAYYLFDMPY LNGMDLRKVP 350
    VQERRAALAA VLEPNQSPLL RFSDAFEETP EALLNSACQM QMEGLIGKRI 400
    GSAYVSRRSN DWIKLKCKNR QEFVVVGFSD PKGARSAFGA LLLGLHDADS 450
    GQLRYAGKVG TGFNETTLKS IYQRLLPLER KEPAVANPPT GYEAKGVHWL 500
    EPTLLAEVAF AEMTKDGSVR HAVFHGLRND KPAKEITQEL AKPMKKTAAT 550
    KKTKAKDEPG ATPAKTKSKA KAPALDGKVR ITHPERVIDA SSGTTKLQLA 600
    EYYASVAEFI LPELADRPAA LVRAPDGIAG ELFFQKNAER LAIPGITSLD 650
    KALTGQPVMI INNAEALIGA VQMSTVELHT WNATSVDLDK PDRFVLDLDP 700
    DPALPWKSMV EATQLTLSVL DELGLKAFLK TSGGKGIHVV VPLTRKLGWD 750
    EVKGFSHAIV SHMAKLLPDR FSAVSGPKNR VGRIFIDYLR NGLGATTICA 800
    YAARTREGLP VSVPVFREEV AELKGANLWN VHNVHERLAQ VGHEPWAGLK 850
    RTRQSITAEM RRRIGMRETD K 871
    Length:871
    Mass (Da):96,171
    Last modified:February 22, 2012 - v1
    Checksum:iF2FE13F8D457EFD0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003150 Genomic DNA. Translation: AEV62937.1.
    RefSeqiWP_014338381.1. NC_016830.1.
    YP_005208332.1. NC_016830.1.

    Genome annotation databases

    EnsemblBacteriaiAEV62937; AEV62937; PSF113_2933.
    GeneIDi11831028.
    KEGGipfe:PSF113_2933.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003150 Genomic DNA. Translation: AEV62937.1 .
    RefSeqi WP_014338381.1. NC_016830.1.
    YP_005208332.1. NC_016830.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEV62937 ; AEV62937 ; PSF113_2933 .
    GeneIDi 11831028.
    KEGGi pfe:PSF113_2933.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PFLU1114970:GJXA-2955-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: F113Imported.

    Entry informationi

    Entry nameiG8Q248_PSEFL
    AccessioniPrimary (citable) accession number: G8Q248
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 22, 2012
    Last sequence update: February 22, 2012
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3