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Protein
Submitted name:

DNA ligase D

Gene

AciX8_1368

Organism
Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGMAL682795:GHBV-1385-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:AciX8_1368Imported
OrganismiGranulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)Imported
Taxonomic identifieri682795 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeGranulicella
ProteomesiUP000007113 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi682795.AciX8_1368.

Structurei

3D structure databases

ProteinModelPortaliG8NZZ5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8NZZ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPTKKAVSR KPASKKTAAK RTPHKTHASA ADAVDEQLAR YREMRDFKVT
60 70 80 90 100
AEPSGKGKST KAKASGLPFV IQKHAASHLH YDFRLGWNGV LKSWAVAKGP
110 120 130 140 150
SYFTGDRRLA VQVEDHPMEY GGFEGIIPKG QYGGGTVMVW DQGTWEPQPG
160 170 180 190 200
HEDVDAGLRE GSLKFVMHGT KMTGKWTLVR MGGKAANERK PNWLLIKEHD
210 220 230 240 250
EFERGKDDPS ITDEAPDSAV TGRTLDQIAG QEDHVWNSKD TARGKAWHRQ
260 270 280 290 300
KPAAPEKKAQ SPRSPKAKND AALKDLPRET QPAFLSPQLA LEATGPPGKE
310 320 330 340 350
GWLHELKLDG YRIQARKSGS DVQLLTRKGL DWTHRMPAIA KDITKLPAEN
360 370 380 390 400
ATLDGEVVVV SENGTTSFAN LQASFQDGEK HPLTYFCFDL LHLNGRNTRG
410 420 430 440 450
LSLRERKALL AEILGEGIGS VHLSEHIETG GESMFHQACE LHAEGIISKW
460 470 480 490 500
GASTYSSGRS GEWLKSKCLR EQEFVIGGYT LSSEGPDRIG SLLLGYYRDG
510 520 530 540 550
KLIYSGRTGT GFTQKTRRTL RKQLGDLENR SMPFARVPVD GRRDAIWVKP
560 570 580 590 600
KLVAQVRFAT WTADNLVRQA AFLGLREDKP AKEVQREEAT VAPQPKGTSK
610 620 630 640 650
RPAKTAPVVA THRAAVPIAA KTATKTATTG SIRLTHPDKI LDAESGLTKA
660 670 680 690 700
DLSAFYQGVA EHMLPHIADR PLSLVRCPEG TGKPCFFQKH VNHMLPPGVG
710 720 730 740 750
GIDVPNKKTG EPEPYITLNT TEALINLAQM GVLEVHPWGS RNDDLEHPDR
760 770 780 790 800
LIFDLDPDES LPWSTLCDAA AEVRKRLKKA GLESFLKTTG GKGLHVVAPI
810 820 830 840 850
QPELDWPQLK ALAHKFVESM ERENPTLYLT KMTKSARKGK IYLDYLRNER
860 870 880 890 900
GATAVAPYSP RARAGAHVSL PLPWSALKLP ERPVYSVKNF DEWRSRLRND
910 920
PWKAMLTTRQ KLDPASFEQA
Length:920
Mass (Da):101,738
Last modified:February 22, 2012 - v1
Checksum:iBE6D42A5BD7DA964
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003130 Genomic DNA. Translation: AEU35711.1.

Genome annotation databases

EnsemblBacteriaiAEU35711; AEU35711; AciX8_1368.
KEGGigma:AciX8_1368.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003130 Genomic DNA. Translation: AEU35711.1.

3D structure databases

ProteinModelPortaliG8NZZ5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi682795.AciX8_1368.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEU35711; AEU35711; AciX8_1368.
KEGGigma:AciX8_1368.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciGMAL682795:GHBV-1385-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Granulicella mallensis MP5ACTX8."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Rawat S.
    , Mannisto M., Haggblom M., Woyke T.
    Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1857 / DSM 23137 / MP5ACTX8Imported.

Entry informationi

Entry nameiG8NZZ5_GRAMM
AccessioniPrimary (citable) accession number: G8NZZ5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: July 22, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.