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G8NZZ5

- G8NZZ5_GRAMM

UniProt

G8NZZ5 - G8NZZ5_GRAMM

Protein
Submitted name:

DNA ligase D

Gene

AciX8_1368

Organism
Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (22 Feb 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciGMAL682795:GHBV-1385-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:AciX8_1368Imported
    OrganismiGranulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)Imported
    Taxonomic identifieri682795 [NCBI]
    Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeGranulicella
    ProteomesiUP000007113: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliG8NZZ5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G8NZZ5-1 [UniParc]FASTAAdd to Basket

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    MAPTKKAVSR KPASKKTAAK RTPHKTHASA ADAVDEQLAR YREMRDFKVT    50
    AEPSGKGKST KAKASGLPFV IQKHAASHLH YDFRLGWNGV LKSWAVAKGP 100
    SYFTGDRRLA VQVEDHPMEY GGFEGIIPKG QYGGGTVMVW DQGTWEPQPG 150
    HEDVDAGLRE GSLKFVMHGT KMTGKWTLVR MGGKAANERK PNWLLIKEHD 200
    EFERGKDDPS ITDEAPDSAV TGRTLDQIAG QEDHVWNSKD TARGKAWHRQ 250
    KPAAPEKKAQ SPRSPKAKND AALKDLPRET QPAFLSPQLA LEATGPPGKE 300
    GWLHELKLDG YRIQARKSGS DVQLLTRKGL DWTHRMPAIA KDITKLPAEN 350
    ATLDGEVVVV SENGTTSFAN LQASFQDGEK HPLTYFCFDL LHLNGRNTRG 400
    LSLRERKALL AEILGEGIGS VHLSEHIETG GESMFHQACE LHAEGIISKW 450
    GASTYSSGRS GEWLKSKCLR EQEFVIGGYT LSSEGPDRIG SLLLGYYRDG 500
    KLIYSGRTGT GFTQKTRRTL RKQLGDLENR SMPFARVPVD GRRDAIWVKP 550
    KLVAQVRFAT WTADNLVRQA AFLGLREDKP AKEVQREEAT VAPQPKGTSK 600
    RPAKTAPVVA THRAAVPIAA KTATKTATTG SIRLTHPDKI LDAESGLTKA 650
    DLSAFYQGVA EHMLPHIADR PLSLVRCPEG TGKPCFFQKH VNHMLPPGVG 700
    GIDVPNKKTG EPEPYITLNT TEALINLAQM GVLEVHPWGS RNDDLEHPDR 750
    LIFDLDPDES LPWSTLCDAA AEVRKRLKKA GLESFLKTTG GKGLHVVAPI 800
    QPELDWPQLK ALAHKFVESM ERENPTLYLT KMTKSARKGK IYLDYLRNER 850
    GATAVAPYSP RARAGAHVSL PLPWSALKLP ERPVYSVKNF DEWRSRLRND 900
    PWKAMLTTRQ KLDPASFEQA 920
    Length:920
    Mass (Da):101,738
    Last modified:February 22, 2012 - v1
    Checksum:iBE6D42A5BD7DA964
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003130 Genomic DNA. Translation: AEU35711.1.
    RefSeqiYP_005056741.1. NC_016631.1.

    Genome annotation databases

    EnsemblBacteriaiAEU35711; AEU35711; AciX8_1368.
    GeneIDi11571817.
    KEGGigma:AciX8_1368.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003130 Genomic DNA. Translation: AEU35711.1 .
    RefSeqi YP_005056741.1. NC_016631.1.

    3D structure databases

    ProteinModelPortali G8NZZ5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEU35711 ; AEU35711 ; AciX8_1368 .
    GeneIDi 11571817.
    KEGGi gma:AciX8_1368.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci GMAL682795:GHBV-1385-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Granulicella mallensis MP5ACTX8."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Rawat S.
      , Mannisto M., Haggblom M., Woyke T.
      Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-1857 / DSM 23137 / MP5ACTX8Imported.

    Entry informationi

    Entry nameiG8NZZ5_GRAMM
    AccessioniPrimary (citable) accession number: G8NZZ5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 22, 2012
    Last sequence update: February 22, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3