G8NTR2 (G8NTR2_GRAMM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

Ordered Locus Names:

AciX8_2056 EMBL AEU36386.1

Organism

Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) [Complete proteome] [HAMAP]

Taxonomic identifier

682795 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Acidobacteriia › Acidobacteriales › Acidobacteriaceae › Granulicella › Granulicella mallensis

Protein attributes

Sequence length	661 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617 EMBL AEU36386.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	G8NTR2 [UniParc]. Last modified February 22, 2012. Version 1. Checksum: 7AFAE79C7406B3C9	FASTA	661	71,326
	10 20 30 40 50 60 MAFFVALATL AEKLSQEGSR LKKRAAIAEA IASLHAAAPE SSDAGRFALY LAGQPFAEND 70 80 90 100 110 120 ARKLNAGGAL LSRAVLTVAG ADNAQLTAAY RRHGDLGAAA HDLLVAPHGK APSTATLTLD 130 140 150 160 170 180 DVADAFAAMA VARTTAARSS LVEGLLTRAT AVEAKYLLKL MLGDMRIGVK QSLIEEAIAV 190 200 210 220 230 240 ASGTEVAAVR HGVMLEADLV CAVGRAFAGT LAAARMTLFH PLGFMLASPV ETPEAAVERF 250 260 270 280 290 300 TEAPAKEKPA KVAKPKKARK KRVGEDFVDL APVQEVVARD APEEGLAEDA QIEALASGEL 310 320 330 340 350 360 SAGSSGVLAF LEDKYDGMRA QVHCGDPSQP GRVAIYSRNR EDITQSFPEL AEAFAQVEEP 370 380 390 400 410 420 MILDGEILGW DFGKSQALPF AVMGQRIGRK VVSDEVRRQI PAVFMAFDLL FVGDELLLPL 430 440 450 460 470 480 PLTRRRMLLE EVVARWSEHA RSALAADSTR KADQAGLFSE TAPVAEQKTR WMLSPSQPVT 490 500 510 520 530 540 DAAAIDQAYR DARARANEGV MLKRADSAYL PGRRGLAWVK LKRELATLDV VITGAEFGHG 550 560 570 580 590 600 KRAGLLSDYT FAVRGQAGQL LNVGKAYSGL TDAEILEMTA WLKAHTLEDR GYFRTVEPQI 610 620 630 640 650 660 VLEVAFNNIM RSSRHASGFA LRFPRILHIR RDKPVSEIDT LEQVEAVYQT QPDRPDESLE E

References

[1]

"Complete sequence of Granulicella mallensis MP5ACTX8." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Rawat S. , Mannisto M., Haggblom M., Woyke T. Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1857 / DSM 23137 / MP5ACTX8.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003130 Genomic DNA. Translation: AEU36386.1.
RefSeq	YP_005057416.1. NC_016631.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEU36386; AEU36386; AciX8_2056.
GeneID	11573163.
KEGG	gma:AciX8_2056.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K10747.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

G8NTR2_GRAMM

Accession

Primary (citable) accession number: G8NTR2

Entry history

Integrated into UniProtKB/TrEMBL:	February 22, 2012
Last sequence update:	February 22, 2012
Last modified:	April 3, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)