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G8NTR2

- G8NTR2_GRAMM

UniProt

G8NTR2 - G8NTR2_GRAMM

Protein

DNA ligase

Gene

AciX8_2056

Organism
Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (22 Feb 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciGMAL682795:GHBV-2083-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:AciX8_2056Imported
    OrganismiGranulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)Imported
    Taxonomic identifieri682795 [NCBI]
    Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeGranulicella
    ProteomesiUP000007113: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G8NTR2-1 [UniParc]FASTAAdd to Basket

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    MAFFVALATL AEKLSQEGSR LKKRAAIAEA IASLHAAAPE SSDAGRFALY    50
    LAGQPFAEND ARKLNAGGAL LSRAVLTVAG ADNAQLTAAY RRHGDLGAAA 100
    HDLLVAPHGK APSTATLTLD DVADAFAAMA VARTTAARSS LVEGLLTRAT 150
    AVEAKYLLKL MLGDMRIGVK QSLIEEAIAV ASGTEVAAVR HGVMLEADLV 200
    CAVGRAFAGT LAAARMTLFH PLGFMLASPV ETPEAAVERF TEAPAKEKPA 250
    KVAKPKKARK KRVGEDFVDL APVQEVVARD APEEGLAEDA QIEALASGEL 300
    SAGSSGVLAF LEDKYDGMRA QVHCGDPSQP GRVAIYSRNR EDITQSFPEL 350
    AEAFAQVEEP MILDGEILGW DFGKSQALPF AVMGQRIGRK VVSDEVRRQI 400
    PAVFMAFDLL FVGDELLLPL PLTRRRMLLE EVVARWSEHA RSALAADSTR 450
    KADQAGLFSE TAPVAEQKTR WMLSPSQPVT DAAAIDQAYR DARARANEGV 500
    MLKRADSAYL PGRRGLAWVK LKRELATLDV VITGAEFGHG KRAGLLSDYT 550
    FAVRGQAGQL LNVGKAYSGL TDAEILEMTA WLKAHTLEDR GYFRTVEPQI 600
    VLEVAFNNIM RSSRHASGFA LRFPRILHIR RDKPVSEIDT LEQVEAVYQT 650
    QPDRPDESLE E 661
    Length:661
    Mass (Da):71,326
    Last modified:February 22, 2012 - v1
    Checksum:i7AFAE79C7406B3C9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003130 Genomic DNA. Translation: AEU36386.1.
    RefSeqiYP_005057416.1. NC_016631.1.

    Genome annotation databases

    EnsemblBacteriaiAEU36386; AEU36386; AciX8_2056.
    GeneIDi11573163.
    KEGGigma:AciX8_2056.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003130 Genomic DNA. Translation: AEU36386.1 .
    RefSeqi YP_005057416.1. NC_016631.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEU36386 ; AEU36386 ; AciX8_2056 .
    GeneIDi 11573163.
    KEGGi gma:AciX8_2056.

    Phylogenomic databases

    KOi K10747.

    Enzyme and pathway databases

    BioCyci GMAL682795:GHBV-2083-MONOMER.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Granulicella mallensis MP5ACTX8."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Rawat S.
      , Mannisto M., Haggblom M., Woyke T.
      Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-1857 / DSM 23137 / MP5ACTX8Imported.

    Entry informationi

    Entry nameiG8NTR2_GRAMM
    AccessioniPrimary (citable) accession number: G8NTR2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 22, 2012
    Last sequence update: February 22, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3