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Protein

Glutamate decarboxylase

Gene

BYI23_B001890

Organism
Burkholderia sp. YI23
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciBSP1097668:GKEO-4683-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
ORF Names:BYI23_B001890Imported
OrganismiBurkholderia sp. YI23Imported
Taxonomic identifieri1097668 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000006801 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi1097668.BYI23_B001890.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

G8MDV9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYDEFNLEVP EDAFPRHGIS GRAASALVWS DEWTDTNPML NMSSFVTTFA
60 70 80 90 100
EPEAVETARR NMYKNYIDHD MYPQLFAMEM RMIRWLHELW NGPKEAEPYG
110 120 130 140 150
AATIGSSEAC MLAGLAHKWN WRQAREKAGR DTSRPNMVTG GNVQIVWKKF
160 170 180 190 200
LRYFDVEPRI VPLKPGNYRL TAEQLDQYVD ENTIAVVAIA GQTFTGEDDD
210 220 230 240 250
IQEIHDWLDA YEKRTGISIP MHIDGASGGF VNPFLYPDYK WDFRLPRVQS
260 270 280 290 300
INASGHKFGL TPPGLGWVVF RERRIFNEDL IFYVNYLGGE MPTATLNFSR
310 320 330 340 350
NAAPIAVQYY QFLRLGFDGY KRIMTHTLAN AVRLRDELVK SGYFTIMNET
360 370 380 390 400
QRIPVVAVTL DPKVKKFNEF DVSNKVREKG WVLSAYSMPP DAEEVRSLRV
410 420 430 440 450
VVRPHINHNV AMNLARDIVG ACDYLDAHGG TATPPTLHKH ATEKTTPAKC
Length:450
Mass (Da):51,312
Last modified:February 22, 2012 - v1
Checksum:i364C847A2A559F8A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003088 Genomic DNA. Translation: AET90796.1.
RefSeqiWP_014250435.1. NC_016625.1.

Genome annotation databases

EnsemblBacteriaiAET90796; AET90796; BYI23_B001890.
KEGGibyi:BYI23_B001890.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003088 Genomic DNA. Translation: AET90796.1.
RefSeqiWP_014250435.1. NC_016625.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1097668.BYI23_B001890.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAET90796; AET90796; BYI23_B001890.
KEGGibyi:BYI23_B001890.

Phylogenomic databases

KOiK01580.

Enzyme and pathway databases

BioCyciBSP1097668:GKEO-4683-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23."
    Lim J.S., Choi B.S., Choi A.Y., Kim K.D., Kim D.I., Choi I.Y., Ka J.O.
    J. Bacteriol. 194:896-896(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YI23Imported.

Entry informationi

Entry nameiG8MDV9_9BURK
AccessioniPrimary (citable) accession number: G8MDV9
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: July 22, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.