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G8M8A4 (G8M8A4_9BURK) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulose-phosphate 3-epimerase PIRNR PIRNR001461
EC=5.1.3.1 PIRNR PIRNR001461
Gene names
ORF Names:BYI23_A023110 EMBL AET90149.1
OrganismBurkholderia sp. YI23 EMBL AET90149.1
Taxonomic identifier1097668 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia

Protein attributes

Sequence length231 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-ribulose 5-phosphate = D-xylulose 5-phosphate. PIRNR PIRNR001461

Cofactor

Binds 1 divalent metal cation per subunit. Active with Co2+, Mn2+ and Zn2+ By similarity. PIRSR PIRSR001461-2

Sequence similarities

Belongs to the ribulose-phosphate 3-epimerase family. PIRNR PIRNR001461

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region143 – 1464Substrate binding By similarity PIRSR PIRSR001461-3
Region202 – 2032Substrate binding By similarity PIRSR PIRSR001461-3

Sites

Active site361Proton acceptor By similarity PIRSR PIRSR001461-1
Active site1801Proton donor By similarity PIRSR PIRSR001461-1
Metal binding341Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding361Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding671Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding1801Divalent metal cation By similarity PIRSR PIRSR001461-2
Binding site91Substrate By similarity PIRSR PIRSR001461-3
Binding site671Substrate By similarity PIRSR PIRSR001461-3
Binding site1821Substrate; via amide nitrogen By similarity PIRSR PIRSR001461-3

Sequences

Sequence LengthMass (Da)Tools
G8M8A4 [UniParc].

Last modified February 22, 2012. Version 1.
Checksum: ACBC7F8B87780038

FASTA23125,083
        10         20         30         40         50         60 
MAQFHIAPSI LSADFSRLGE EVRNVVAAGA DWIHFDVMDN HYVPNLTIGP MVCEAIRPHV 

        70         80         90        100        110        120 
DVPIDVHLMV RPVDRIVPDF AKAGANVISF HPEGSDHIDR TLSLIRDHGC KAGLVFNPAT 

       130        140        150        160        170        180 
PLNYLDHVMD KVDLVLIMSV NPGFGGQSFI PEALNKLREA RARINAYRDR TGREIHLEVD 

       190        200        210        220        230 
GGVKVDNIAE IAAAGADSFV AGSAIFGKPD YKQVIDAMRA ELAKAESGAK A

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References

[1]"Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23."
Lim J.S., Choi B.S., Choi A.Y., Kim K.D., Kim D.I., Choi I.Y., Ka J.O.
J. Bacteriol. 194:896-896(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: YI23 EMBL AET90149.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003087 Genomic DNA. Translation: AET90149.1.
RefSeqYP_004978126.1. NC_016589.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAET90149; AET90149; BYI23_A023110.
GeneID11747046.
KEGGbyi:BYI23_A023110.

Phylogenomic databases

KOK01783.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
InterProIPR013785. Aldolase_TIM.
IPR026019. Ribul_P_3_epim.
IPR000056. Ribul_P_3_epim-like.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PANTHERPTHR11749. PTHR11749. 1 hit.
PfamPF00834. Ribul_P_3_epim. 1 hit.
[Graphical view]
PIRSFPIRSF001461. RPE. 1 hit.
SUPFAMSSF51366. RibP_bind_barrel. 1 hit.
TIGRFAMsTIGR01163. rpe. 1 hit.
PROSITEPS01085. RIBUL_P_3_EPIMER_1. 1 hit.
PS01086. RIBUL_P_3_EPIMER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG8M8A4_9BURK
AccessionPrimary (citable) accession number: G8M8A4
Entry history
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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