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G8M4Z4

- G8M4Z4_9BURK

UniProt

G8M4Z4 - G8M4Z4_9BURK

Protein
Submitted name:

ATP dependent DNA ligase

Gene

BYI23_A005210

Organism
Burkholderia sp. YI23
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (22 Feb 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBSP1097668:GKEO-525-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    ORF Names:BYI23_A005210Imported
    OrganismiBurkholderia sp. YI23Imported
    Taxonomic identifieri1097668 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000006801: Chromosome 1

    Structurei

    3D structure databases

    ProteinModelPortaliG8M4Z4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G8M4Z4-1 [UniParc]FASTAAdd to Basket

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    MKRFATLYTA LDATTSTNEK LEALIAYFAG AAPEDAAWAS YFLAGGKPRQ    50
    SVPTRLLAEF ARERAGLPEW LFEESYQAVG DLAETIAHVL PAASGESSLG 100
    LAQWIEERVL TLRGASPVEL RERLLSYWDE LDWSERFLLT KLIGGGFRVG 150
    VARQLVVRAL AEIAGVDHKR IAQRMVGWTD SRQTPSAARY LRLIAPAADG 200
    DDVDTPHESD IGLPYPFFLA HPLQTDPATL GATSEWIAEW KWDGIRAQLV 250
    KRAGRVWIWS RGEDLVTERF PELANLGAAL PDGTVIDGEI LAWEPGADAP 300
    LPFARLQPRI TRKSLTKKVL ADSPAALLAY DLLEADGRDL RTEPLHARRA 350
    RLDTLAASLA VDVLRVSPMV AASGWEALAA LREESRARGV EGLMLKERAS 400
    MYGVGRTKAS GTWWKWKIDP YAIDAVLLYA QRGHGRRASL YTDFTFAVWD 450
    EADGMRTLVP FAKAYSGLTD EEMRQVDAIV RKTTIEKFGP VRSVTPTLVF 500
    EIGFEGIQAS PRHKSGIAVR FPRMLRWRTD KQIEDADTLD MLKGFLNEAT 550
    A 551
    Length:551
    Mass (Da):61,100
    Last modified:February 22, 2012 - v1
    Checksum:i5140DDE185671CC8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003087 Genomic DNA. Translation: AET88359.1.
    RefSeqiWP_014190595.1. NC_016589.1.
    YP_004976336.1. NC_016589.1.

    Genome annotation databases

    EnsemblBacteriaiAET88359; AET88359; BYI23_A005210.
    GeneIDi11745902.
    KEGGibyi:BYI23_A005210.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003087 Genomic DNA. Translation: AET88359.1 .
    RefSeqi WP_014190595.1. NC_016589.1.
    YP_004976336.1. NC_016589.1.

    3D structure databases

    ProteinModelPortali G8M4Z4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AET88359 ; AET88359 ; BYI23_A005210 .
    GeneIDi 11745902.
    KEGGi byi:BYI23_A005210.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci BSP1097668:GKEO-525-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23."
      Lim J.S., Choi B.S., Choi A.Y., Kim K.D., Kim D.I., Choi I.Y., Ka J.O.
      J. Bacteriol. 194:896-896(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: YI23Imported.

    Entry informationi

    Entry nameiG8M4Z4_9BURK
    AccessioniPrimary (citable) accession number: G8M4Z4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 22, 2012
    Last sequence update: February 22, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3