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Protein
Submitted name:

ATP dependent DNA ligase

Gene

BYI23_A005210

Organism
Burkholderia sp. YI23
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP1097668:GKEO-525-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
ORF Names:BYI23_A005210Imported
OrganismiBurkholderia sp. YI23Imported
Taxonomic identifieri1097668 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000006801 Componenti: Chromosome 1

Structurei

3D structure databases

ProteinModelPortaliG8M4Z4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8M4Z4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFATLYTA LDATTSTNEK LEALIAYFAG AAPEDAAWAS YFLAGGKPRQ
60 70 80 90 100
SVPTRLLAEF ARERAGLPEW LFEESYQAVG DLAETIAHVL PAASGESSLG
110 120 130 140 150
LAQWIEERVL TLRGASPVEL RERLLSYWDE LDWSERFLLT KLIGGGFRVG
160 170 180 190 200
VARQLVVRAL AEIAGVDHKR IAQRMVGWTD SRQTPSAARY LRLIAPAADG
210 220 230 240 250
DDVDTPHESD IGLPYPFFLA HPLQTDPATL GATSEWIAEW KWDGIRAQLV
260 270 280 290 300
KRAGRVWIWS RGEDLVTERF PELANLGAAL PDGTVIDGEI LAWEPGADAP
310 320 330 340 350
LPFARLQPRI TRKSLTKKVL ADSPAALLAY DLLEADGRDL RTEPLHARRA
360 370 380 390 400
RLDTLAASLA VDVLRVSPMV AASGWEALAA LREESRARGV EGLMLKERAS
410 420 430 440 450
MYGVGRTKAS GTWWKWKIDP YAIDAVLLYA QRGHGRRASL YTDFTFAVWD
460 470 480 490 500
EADGMRTLVP FAKAYSGLTD EEMRQVDAIV RKTTIEKFGP VRSVTPTLVF
510 520 530 540 550
EIGFEGIQAS PRHKSGIAVR FPRMLRWRTD KQIEDADTLD MLKGFLNEAT

A
Length:551
Mass (Da):61,100
Last modified:February 22, 2012 - v1
Checksum:i5140DDE185671CC8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003087 Genomic DNA. Translation: AET88359.1.
RefSeqiWP_014190595.1. NC_016589.1.
YP_004976336.1. NC_016589.1.

Genome annotation databases

EnsemblBacteriaiAET88359; AET88359; BYI23_A005210.
KEGGibyi:BYI23_A005210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003087 Genomic DNA. Translation: AET88359.1.
RefSeqiWP_014190595.1. NC_016589.1.
YP_004976336.1. NC_016589.1.

3D structure databases

ProteinModelPortaliG8M4Z4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAET88359; AET88359; BYI23_A005210.
KEGGibyi:BYI23_A005210.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciBSP1097668:GKEO-525-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23."
    Lim J.S., Choi B.S., Choi A.Y., Kim K.D., Kim D.I., Choi I.Y., Ka J.O.
    J. Bacteriol. 194:896-896(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YI23Imported.

Entry informationi

Entry nameiG8M4Z4_9BURK
AccessioniPrimary (citable) accession number: G8M4Z4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: April 1, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.