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G8M3M4

- G8M3M4_9BURK

UniProt

G8M3M4 - G8M3M4_9BURK

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Protein
Submitted name: DNA ligase D
Gene
BYI23_A015080
Organism
Burkholderia sp. YI23
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP1097668:GKEO-1530-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:BYI23_A015080Imported
OrganismiBurkholderia sp. YI23Imported
Taxonomic identifieri1097668 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000006801: Chromosome 1

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8M3M4-1 [UniParc]FASTAAdd to Basket

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MAEKLDTYQR MRRFDKTPEP SGAAKRSGGA RAKKTATKKT AKRAMSFVIQ    50
EHDARRLHYD FRLELDGTLK SWAVPKGPSL DPSVKRLAVH VEDHPLDYGS 100
FEGEIPEGNY GAGSVIVWDR GTWAPQSGSV EEAAREYEKG KLKFVLDGEK 150
LHGGWTLVKS HMRGSGDKEQ WLLIKERDDE ARSEAEYDIL LKKPGSVLSE 200
SLGARAKNGA LIDRAERKAA AKKAPARRTA ARKQSDGHAH PDIVANRSAE 250
SLRTLSHEPA IEGAVKAKLP ATFKPQLATL VDAAPPGEDW AYEIKFDGYR 300
MLARIETTRG KRDIRIYTRN GNDWSAKFSK QVKALEKLDI ESGWLDGEAV 350
VLDERGLPDF QALQNAFDAG RPQDIVVYFF DVPYLNGYDL RHVPLVQRRA 400
MLKALIEPVD DSVLRYSQDF AFHADELLKS ACDMALEGII GKRIDSAYVP 450
GRGNSWIKLK CRRRQEFVIG GYSEPSGSRG EFGALLLGVY DKSGKLQYAG 500
RVGTGFDQKM LVAVKKELDK RETPRMPFAS EPQERSRTPV HWVKPELVAE 550
CNFAEWTKER IVRQASFVSL RDDKPARQIV KEEPVAAKKV AAKKTAAVKK 600
AKASSAEVEG VKISHPDRVI DKSAGYTKLD VVEYYASVAK WMLPHLKDRP 650
VSLVRAPEDI GGELFFQKHS AKLAIPHITQ HPDIDPGHPP LLTIESSKAL 700
VGTAQMGTIE LHTWNAVASN IEKPDRMVFD LDPGEGVGWE RMIEAAKLTK 750
ELLAELGLTS FCKTSGGKGF HVVVPLRKHA DWDEMKAFSQ AVAQHMANAL 800
PKFFSAKMGM QNRKGKIFID YLRNNRGSST VAAFSLRARP GLGASMPLSW 850
DELDDVTSGD QWNIGNARER LDALKRDPWA DYEKARQRLT AEMKKRLGMN 900
GERK 904
Length:904
Mass (Da):100,865
Last modified:February 22, 2012 - v1
Checksum:i036AFA9893EB882C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003087 Genomic DNA. Translation: AET89346.1.
RefSeqiWP_014191571.1. NC_016589.1.
YP_004977323.1. NC_016589.1.

Genome annotation databases

EnsemblBacteriaiAET89346; AET89346; BYI23_A015080.
GeneIDi11746313.
KEGGibyi:BYI23_A015080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003087 Genomic DNA. Translation: AET89346.1 .
RefSeqi WP_014191571.1. NC_016589.1.
YP_004977323.1. NC_016589.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AET89346 ; AET89346 ; BYI23_A015080 .
GeneIDi 11746313.
KEGGi byi:BYI23_A015080.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci BSP1097668:GKEO-1530-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23."
    Lim J.S., Choi B.S., Choi A.Y., Kim K.D., Kim D.I., Choi I.Y., Ka J.O.
    J. Bacteriol. 194:896-896(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YI23Imported.

Entry informationi

Entry nameiG8M3M4_9BURK
AccessioniPrimary (citable) accession number: G8M3M4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: September 3, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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