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Protein
Submitted name:

DNA ligase D

Gene

BYI23_A015080

Organism
Burkholderia sp. YI23
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP1097668:GKEO-1530-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:BYI23_A015080Imported
OrganismiBurkholderia sp. YI23Imported
Taxonomic identifieri1097668 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000006801 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi1097668.BYI23_A015080.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8M3M4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEKLDTYQR MRRFDKTPEP SGAAKRSGGA RAKKTATKKT AKRAMSFVIQ
60 70 80 90 100
EHDARRLHYD FRLELDGTLK SWAVPKGPSL DPSVKRLAVH VEDHPLDYGS
110 120 130 140 150
FEGEIPEGNY GAGSVIVWDR GTWAPQSGSV EEAAREYEKG KLKFVLDGEK
160 170 180 190 200
LHGGWTLVKS HMRGSGDKEQ WLLIKERDDE ARSEAEYDIL LKKPGSVLSE
210 220 230 240 250
SLGARAKNGA LIDRAERKAA AKKAPARRTA ARKQSDGHAH PDIVANRSAE
260 270 280 290 300
SLRTLSHEPA IEGAVKAKLP ATFKPQLATL VDAAPPGEDW AYEIKFDGYR
310 320 330 340 350
MLARIETTRG KRDIRIYTRN GNDWSAKFSK QVKALEKLDI ESGWLDGEAV
360 370 380 390 400
VLDERGLPDF QALQNAFDAG RPQDIVVYFF DVPYLNGYDL RHVPLVQRRA
410 420 430 440 450
MLKALIEPVD DSVLRYSQDF AFHADELLKS ACDMALEGII GKRIDSAYVP
460 470 480 490 500
GRGNSWIKLK CRRRQEFVIG GYSEPSGSRG EFGALLLGVY DKSGKLQYAG
510 520 530 540 550
RVGTGFDQKM LVAVKKELDK RETPRMPFAS EPQERSRTPV HWVKPELVAE
560 570 580 590 600
CNFAEWTKER IVRQASFVSL RDDKPARQIV KEEPVAAKKV AAKKTAAVKK
610 620 630 640 650
AKASSAEVEG VKISHPDRVI DKSAGYTKLD VVEYYASVAK WMLPHLKDRP
660 670 680 690 700
VSLVRAPEDI GGELFFQKHS AKLAIPHITQ HPDIDPGHPP LLTIESSKAL
710 720 730 740 750
VGTAQMGTIE LHTWNAVASN IEKPDRMVFD LDPGEGVGWE RMIEAAKLTK
760 770 780 790 800
ELLAELGLTS FCKTSGGKGF HVVVPLRKHA DWDEMKAFSQ AVAQHMANAL
810 820 830 840 850
PKFFSAKMGM QNRKGKIFID YLRNNRGSST VAAFSLRARP GLGASMPLSW
860 870 880 890 900
DELDDVTSGD QWNIGNARER LDALKRDPWA DYEKARQRLT AEMKKRLGMN

GERK
Length:904
Mass (Da):100,865
Last modified:February 22, 2012 - v1
Checksum:i036AFA9893EB882C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003087 Genomic DNA. Translation: AET89346.1.
RefSeqiWP_014191571.1. NC_016589.1.

Genome annotation databases

EnsemblBacteriaiAET89346; AET89346; BYI23_A015080.
KEGGibyi:BYI23_A015080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003087 Genomic DNA. Translation: AET89346.1.
RefSeqiWP_014191571.1. NC_016589.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1097668.BYI23_A015080.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAET89346; AET89346; BYI23_A015080.
KEGGibyi:BYI23_A015080.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciBSP1097668:GKEO-1530-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23."
    Lim J.S., Choi B.S., Choi A.Y., Kim K.D., Kim D.I., Choi I.Y., Ka J.O.
    J. Bacteriol. 194:896-896(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YI23Imported.

Entry informationi

Entry nameiG8M3M4_9BURK
AccessioniPrimary (citable) accession number: G8M3M4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 22, 2012
Last sequence update: February 22, 2012
Last modified: July 22, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.