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G8M3M4

- G8M3M4_9BURK

UniProt

G8M3M4 - G8M3M4_9BURK

Protein
Submitted name:

DNA ligase D

Gene

BYI23_A015080

Organism
Burkholderia sp. YI23
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (22 Feb 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBSP1097668:GKEO-1530-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    ORF Names:BYI23_A015080Imported
    OrganismiBurkholderia sp. YI23Imported
    Taxonomic identifieri1097668 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000006801: Chromosome 1

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G8M3M4-1 [UniParc]FASTAAdd to Basket

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    MAEKLDTYQR MRRFDKTPEP SGAAKRSGGA RAKKTATKKT AKRAMSFVIQ    50
    EHDARRLHYD FRLELDGTLK SWAVPKGPSL DPSVKRLAVH VEDHPLDYGS 100
    FEGEIPEGNY GAGSVIVWDR GTWAPQSGSV EEAAREYEKG KLKFVLDGEK 150
    LHGGWTLVKS HMRGSGDKEQ WLLIKERDDE ARSEAEYDIL LKKPGSVLSE 200
    SLGARAKNGA LIDRAERKAA AKKAPARRTA ARKQSDGHAH PDIVANRSAE 250
    SLRTLSHEPA IEGAVKAKLP ATFKPQLATL VDAAPPGEDW AYEIKFDGYR 300
    MLARIETTRG KRDIRIYTRN GNDWSAKFSK QVKALEKLDI ESGWLDGEAV 350
    VLDERGLPDF QALQNAFDAG RPQDIVVYFF DVPYLNGYDL RHVPLVQRRA 400
    MLKALIEPVD DSVLRYSQDF AFHADELLKS ACDMALEGII GKRIDSAYVP 450
    GRGNSWIKLK CRRRQEFVIG GYSEPSGSRG EFGALLLGVY DKSGKLQYAG 500
    RVGTGFDQKM LVAVKKELDK RETPRMPFAS EPQERSRTPV HWVKPELVAE 550
    CNFAEWTKER IVRQASFVSL RDDKPARQIV KEEPVAAKKV AAKKTAAVKK 600
    AKASSAEVEG VKISHPDRVI DKSAGYTKLD VVEYYASVAK WMLPHLKDRP 650
    VSLVRAPEDI GGELFFQKHS AKLAIPHITQ HPDIDPGHPP LLTIESSKAL 700
    VGTAQMGTIE LHTWNAVASN IEKPDRMVFD LDPGEGVGWE RMIEAAKLTK 750
    ELLAELGLTS FCKTSGGKGF HVVVPLRKHA DWDEMKAFSQ AVAQHMANAL 800
    PKFFSAKMGM QNRKGKIFID YLRNNRGSST VAAFSLRARP GLGASMPLSW 850
    DELDDVTSGD QWNIGNARER LDALKRDPWA DYEKARQRLT AEMKKRLGMN 900
    GERK 904
    Length:904
    Mass (Da):100,865
    Last modified:February 22, 2012 - v1
    Checksum:i036AFA9893EB882C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003087 Genomic DNA. Translation: AET89346.1.
    RefSeqiWP_014191571.1. NC_016589.1.
    YP_004977323.1. NC_016589.1.

    Genome annotation databases

    EnsemblBacteriaiAET89346; AET89346; BYI23_A015080.
    GeneIDi11746313.
    KEGGibyi:BYI23_A015080.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003087 Genomic DNA. Translation: AET89346.1 .
    RefSeqi WP_014191571.1. NC_016589.1.
    YP_004977323.1. NC_016589.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AET89346 ; AET89346 ; BYI23_A015080 .
    GeneIDi 11746313.
    KEGGi byi:BYI23_A015080.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci BSP1097668:GKEO-1530-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of the Fenitrothion-Degrading Burkholderia sp. Strain YI23."
      Lim J.S., Choi B.S., Choi A.Y., Kim K.D., Kim D.I., Choi I.Y., Ka J.O.
      J. Bacteriol. 194:896-896(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: YI23Imported.

    Entry informationi

    Entry nameiG8M3M4_9BURK
    AccessioniPrimary (citable) accession number: G8M3M4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 22, 2012
    Last sequence update: February 22, 2012
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3