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Protein
Submitted name:

Protein HDA-6, isoform d

Gene

hda-6

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. protein deacetylase activity Source: WormBase
  2. zinc ion binding Source: InterPro

GO - Biological processi

  1. protein deacetylation Source: GOC
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein HDA-6, isoform dImported
Gene namesi
Name:hda-6Imported
ORF Names:CELE_F41H10.6Imported, F41H10.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940: Chromosome IV

Organism-specific databases

WormBaseiF41H10.6d; CE45122; WBGene00018319; hda-6.

Expressioni

Gene expression databases

ExpressionAtlasiG8JYB7. baseline.

Structurei

3D structure databases

ProteinModelPortaliG8JYB7.
SMRiG8JYB7. Positions 34-137.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000062809.
KOiK11407.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR013083. Znf_RING/FYVE/PHD.
IPR001607. Znf_UBP.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF02148. zf-UBP. 1 hit.
[Graphical view]
PROSITEiPS50271. ZF_UBP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8JYB7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADQSSSSGS SSSSTRPSHN LEIMDSGPAH AVVPLATCPH LKEVKPLPPA
60 70 80 90 100
KINARTACSE CQIGAEVWTC LTCYKYNCGR FVNEHAMMHH LSSSHPMALS
110 120 130
MADLSVWCYP CDSYVHNPAL IGAKSAAHES KFGETMPS
Length:138
Mass (Da):14,821
Last modified:January 25, 2012 - v1
Checksum:i7EF0BD87087304C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081367 Genomic DNA. Translation: CCD71107.1.
RefSeqiNP_001255270.1. NM_001268341.1.
UniGeneiCel.12964.

Genome annotation databases

EnsemblMetazoaiF41H10.6d; F41H10.6d; WBGene00018319.
GeneIDi177316.
KEGGicel:CELE_F41H10.6.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081367 Genomic DNA. Translation: CCD71107.1.
RefSeqiNP_001255270.1. NM_001268341.1.
UniGeneiCel.12964.

3D structure databases

ProteinModelPortaliG8JYB7.
SMRiG8JYB7. Positions 34-137.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF41H10.6d; F41H10.6d; WBGene00018319.
GeneIDi177316.
KEGGicel:CELE_F41H10.6.

Organism-specific databases

CTDi177316.
WormBaseiF41H10.6d; CE45122; WBGene00018319; hda-6.

Phylogenomic databases

GeneTreeiENSGT00530000062809.
KOiK11407.

Gene expression databases

ExpressionAtlasiG8JYB7. baseline.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR013083. Znf_RING/FYVE/PHD.
IPR001607. Znf_UBP.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF02148. zf-UBP. 1 hit.
[Graphical view]
PROSITEiPS50271. ZF_UBP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiG8JYB7_CAEEL
AccessioniPrimary (citable) accession number: G8JYB7
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: January 7, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.