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Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

AZOBR_140226

Organism
Azospirillum brasilense Sp245
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependentImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:AZOBR_140226Imported
OrganismiAzospirillum brasilense Sp245Imported
Taxonomic identifieri1064539 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeAzospirillum
ProteomesiUP000007319: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG8AMN4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G8AMN4-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MRNFSALIDG LVFMPARNGK IRLLADFFAT TPDPDRGWAL AALTESLVFH
60 70 80 90 100
EAKPAAIRQL VATRVDPELF ALSYDYVGDL AETVALIWPE RPERANSLPP
110 120 130 140 150
SMTEVVETLR AAKRGQVMGL VEGWLDTLDS SGRFALLKLI TGSLRVGVSA
160 170 180 190 200
RLAKTALAEW GKVDLGDLEE CWHGLTPPYA ELFAWLEGRS DRPAAGKGAG
210 220 230 240 250
FRPLMLSHPL EEEDMGGLDP ADYAAEWKWD GIRVQLAARG GERRIYSRTG
260 270 280 290 300
DDVSGAFPDI ADHMTFDAVL DGELLVARDE GEIAPFNDLQ QRLNRKTVTA
310 320 330 340 350
AMLKEFPAWV RLYDILFDGE EDLRSLPFTE RRARLERWHD AVRPRRMDLS
360 370 380 390 400
PLVPFEGWEA LKGLREGSRE NSIEGLMLKR KDSVYVAGRP KGPWFKWKRG
410 420 430 440 450
ALTLDTVLMY AQRGHGKRSS YYSDFTFGVW RGEELVPVGK AYFGFTDAEL
460 470 480 490 500
VELDRWVRNR TTRRYGPVRE VEPGLVLEVA FDSVHPSNRH KSGLAMRFPR
510 520
VHRIRWDKPA VEADRLETLQ AMVVG
Length:525
Mass (Da):59,221
Last modified:January 25, 2012 - v1
Checksum:i3B5C54F327B6D3A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE577327 Genomic DNA. Translation: CCC98496.1.
RefSeqiWP_014240717.1. NC_016617.1.
YP_005031886.1. NC_016617.1.

Genome annotation databases

EnsemblBacteriaiCCC98496; CCC98496; AZOBR_140226.
GeneIDi13107200.
KEGGiabs:AZOBR_140226.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE577327 Genomic DNA. Translation: CCC98496.1.
RefSeqiWP_014240717.1. NC_016617.1.
YP_005031886.1. NC_016617.1.

3D structure databases

ProteinModelPortaliG8AMN4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCC98496; CCC98496; AZOBR_140226.
GeneIDi13107200.
KEGGiabs:AZOBR_140226.

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiG8AMN4_AZOBR
AccessioniPrimary (citable) accession number: G8AMN4
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: January 7, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.