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Protein
Submitted name:

Nuclear receptor subfamily 2 group C member 2

Gene

CLF_106105

Organism
Clonorchis sinensis (Chinese liver fluke)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi667 – 742Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorImported
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Nuclear receptor subfamily 2 group C member 2Imported
Gene namesi
ORF Names:CLF_106105Imported
OrganismiClonorchis sinensis (Chinese liver fluke)Imported
Taxonomic identifieri79923 [NCBI]
Taxonomic lineageiEukaryotaMetazoaPlatyhelminthesTrematodaDigeneaOpisthorchiidaOpisthorchiataOpisthorchiidaeClonorchis
Proteomesi
  • UP000008909 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini667 – 742Nuclear receptorInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.SAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

InParanoidiG7YEQ5.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR035500. NHR_like_dom_sf.
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
PRINTSiPR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00399. ZnF_C4. 1 hit.
SUPFAMiSSF48508. SSF48508. 2 hits.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

G7YEQ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAASQTSVDP VAAAVSSWSQ TLSTNQANTS TQLNVTNANS NNFINTVSLT
60 70 80 90 100
PLSAFDPNSR TGGVITNVLF SQACLMPKLE AETNIGSFLT QSSGPTILQP
110 120 130 140 150
HTVPILDAAQ TLQTVSNQGL SNLLSNLASN LSAATTPTIP VGKTSNAQLL
160 170 180 190 200
QLLRSVGSLP ANSGPATVSS TANELTLTSV VPPNLHADGT GSTLRSPTAV
210 220 230 240 250
NPTNDRNSTS GTLGTDVSVA NNLPSGGNTV SATVQDLTTL LAQSGSSMND
260 270 280 290 300
FLYCLLQSAL LNHVNTQRPE SKKDTFSLDS NTLISLLSGA PLSQLRPTSM
310 320 330 340 350
SNGTSGLDLL TTGLDSLSGN NSNNNSSGSS GNNNTALPTV YLRQALETLV
360 370 380 390 400
PQSNTVSNEQ DSTAANVAAL AANSNVRGQL LENLNMVSAY QQLSRLNNSS
410 420 430 440 450
SNNIRKLPIP FANCAGIPVT MIPVSSDSSS QAATLNLEAL AQLSSSTATT
460 470 480 490 500
TNNSTGTSTA SLSTELISQL LSQNSASDNT TASVPSSDDS LSMALQSLLI
510 520 530 540 550
KQLLDATSTS AVPQKQFTIS GSSNDPSTGS VLPTSFSDCR IICGPNQFRS
560 570 580 590 600
ETLSQALNPS VSTIIPNVSN TVSTRSTFAR PSRISPSPMS ANATTISQAP
610 620 630 640 650
NISVSFGTCS TPSSTPCILL SNEVTTPNEH SRSPNTSLTT SNSSNKLEGM
660 670 680 690 700
TGKTDAAASV TGEGHSWEPC RVCGDKASGR HYGVVSCEGC KGFFKRSIRG
710 720 730 740 750
HVSYVCRSDQ NCLVNKAYRN RCQYCRLQKC LLVGMRSEAV QNERRPSTAY
760 770 780 790 800
EFGGGGPSSP NMPAMDTPSR TRLLLPRPSS ESSQLQTQAI KLEQSMDGEG
810 820 830 840 850
GEFLSHPSEL NNPRSASDDS QTYENSPVGS SHTNGSHTAP HMYSGEPQTH
860 870 880 890 900
VDDQFHQSTP AVSVMNPMTF STNNDATGLT HLVTLTSPQM STTQPLLTFS
910 920 930 940 950
ADQFPSISFT PSSLDGTQAC LLSRLPLSGS KNELLTTAPR QDNSPSGLTT
960 970 980 990 1000
SRGLELSQSL SDLTRSLSNL SGMDMQRSIS PLRRATYSSP ISGLTCKTRD
1010 1020 1030 1040 1050
PALINKTPSV ADTLDKLTIP SNIELTELTK AALNAVVGKD TTSTVTLPSQ
1060 1070 1080 1090 1100
DRSLAALYTY WLMTTAESLN NTAVTTTPQQ PPINPARATF THLLERLAAG
1110 1120 1130 1140 1150
SGDNSNLLTG DTSVVPSRQA TTAISTPSQA PSQQTQPLQP APPPLQTSQL
1160 1170 1180 1190 1200
GRSGQADTLE ALLAMMMGVN GNGTATLSLA TPGNQLKLAP VVPTTLEPKL
1210 1220 1230 1240 1250
TFSSPISVTL TAAPTVSPVV SSVPPAPPNR ATNLLNLLGR RLSGGTPPNL
1260 1270 1280 1290 1300
TVTESTRPER PLSTGLSVSN CVPTSNPNKT AERLDEPPMT RLRKRKAGVA
1310 1320 1330 1340 1350
SPELTGSPRR PRWEEQNGDA DGTDQSLYAP SVDKRLNPGT QSRVASPEPS
1360 1370 1380 1390 1400
TVTSFDGPIV CHSTMNSVFE LTPDVIRTCN LSRSTRTSSA SVSNELASRV
1410 1420 1430 1440 1450
LFLTVDWLSR FECLKRLPIW AQRDLVAVSW SDLFVLGLCQ TFQQLKQLER
1460 1470 1480 1490 1500
DDLPDPKAAS NHSTSSPAIV LKPEADCSPQ KKLCQPNATT GKSELNGIPG
1510 1520 1530 1540 1550
GAKLSDSPAD PSDTFHSSDA VRPSKAPSPS SAVVELVDRL LVQFVEANIS
1560 1570 1580 1590 1600
ADEYSYLRCM VVLGSGHLCL GLRDIKLAQQ VAELESRVLS EFAEFLTAQT
1610 1620 1630 1640 1650
SGKDRTDSGS SPTKTMVQRG LVLTQLLSTL RYLDPKDLEE AFFSSLLGSV
1660 1670 1680 1690 1700
SIAQIIPFLL QSEQPLIGTS PILTQLPLQV SLPLTGTKTS VSATITTTTT
1710 1720 1730 1740 1750
TDPIQKSTDP VPLNRMSPDQ LSTDSTTGLI ESSACVLDKP QKEQQMAKES
1760 1770 1780
PVSAMETESS VQEHSSLPKN SIVEGDNPTT NGILSDEVG
Length:1,789
Mass (Da):188,664
Last modified:January 25, 2012 - v1
Checksum:iEC508EC0F54ED769
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DF143154 Genomic DNA. Translation: GAA51438.1.

Similar proteinsi

Entry informationi

Entry nameiG7YEQ5_CLOSI
AccessioniPrimary (citable) accession number: G7YEQ5
Entry historyiIntegrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: November 22, 2017
This is version 32 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported