Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase

Gene

DSC_15135

Organism
Pseudoxanthomonas spadix (strain BD-a59)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSPA1045855:GH5V-2867-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:DSC_15135Imported
OrganismiPseudoxanthomonas spadix (strain BD-a59)Imported
Taxonomic identifieri1045855 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaePseudoxanthomonas
ProteomesiUP000005870 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi1045855.DSC_15135.

Structurei

3D structure databases

ProteinModelPortaliG7UW13.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

G7UW13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVMLLSLLL SLLLNCLLLG VPAHAEPPRL MLATGYHGHL ALADYLVSEK
60 70 80 90 100
LDGVRGRWDG QALWTRGGAR IDAPAWFTRG WPTQPLDGEL WLGRGRFDAA
110 120 130 140 150
SALVRAGNAD DPAWHDLHFM LFDLPADAGP FEARVARMQA LVKASGNAQL
160 170 180 190 200
RLVEQRRIDN VAALDAQFAR VVAAGGEGLM LHRRDAHYLV GRSDALLKYK
210 220 230 240 250
PYDDAEARVV AHLGGKGKYA GLLGALLVQL PDGRSFRIGS GFTDAQRAAP
260 270 280
PPLGAWVTYR YNGLTSKGLP RFARFLHVRD EPPPPDPQR
Length:289
Mass (Da):31,659
Last modified:January 25, 2012 - v1
Checksum:i713C7CD6AA4657DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003093 Genomic DNA. Translation: AER57671.1.
RefSeqiWP_014161844.1. NC_016147.2.

Genome annotation databases

EnsemblBacteriaiAER57671; AER57671; DSC_15135.
KEGGipsd:DSC_15135.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003093 Genomic DNA. Translation: AER57671.1.
RefSeqiWP_014161844.1. NC_016147.2.

3D structure databases

ProteinModelPortaliG7UW13.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1045855.DSC_15135.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAER57671; AER57671; DSC_15135.
KEGGipsd:DSC_15135.

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Enzyme and pathway databases

BioCyciPSPA1045855:GH5V-2867-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the BTEX-Degrading Bacterium Pseudoxanthomonas spadix BD-a59."
    Lee S.H., Jin H.M., Lee H.J., Kim J.M., Jeon C.O.
    J. Bacteriol. 194:544-544(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BD-a59Imported.

Entry informationi

Entry nameiG7UW13_PSEUP
AccessioniPrimary (citable) accession number: G7UW13
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: July 22, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.