ID   G7TCQ3_XANOB            Unreviewed;       330 AA.
AC   G7TCQ3;
DT   25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT   25-JAN-2012, sequence version 1.
DT   27-MAR-2024, entry version 38.
DE   SubName: Full=DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:AEQ96230.1};
GN   Name=ligD {ECO:0000313|EMBL:AEQ96230.1};
GN   ORFNames=XOC_2085 {ECO:0000313|EMBL:AEQ96230.1};
OS   Xanthomonas oryzae pv. oryzicola (strain BLS256).
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales;
OC   Xanthomonadaceae; Xanthomonas.
OX   NCBI_TaxID=383407 {ECO:0000313|EMBL:AEQ96230.1, ECO:0000313|Proteomes:UP000008851};
RN   [1] {ECO:0000313|EMBL:AEQ96230.1, ECO:0000313|Proteomes:UP000008851}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BLS256 {ECO:0000313|EMBL:AEQ96230.1,
RC   ECO:0000313|Proteomes:UP000008851};
RX   PubMed=21784931; DOI=10.1128/JB.05262-11;
RA   Bogdanove A.J., Koebnik R., Lu H., Furutani A., Angiuoli S.V., Patil P.B.,
RA   Van Sluys M.A., Ryan R.P., Meyer D.F., Han S.W., Aparna G., Rajaram M.,
RA   Delcher A.L., Phillippy A.M., Puiu D., Schatz M.C., Shumway M.,
RA   Sommer D.D., Trapnell C., Benahmed F., Dimitrov G., Madupu R., Radune D.,
RA   Sullivan S., Jha G., Ishihara H., Lee S.W., Pandey A., Sharma V.,
RA   Sriariyanun M., Szurek B., Vera-Cruz C.M., Dorman K.S., Ronald P.C.,
RA   Verdier V., Dow J.M., Sonti R.V., Tsuge S., Brendel V.P., Rabinowicz P.D.,
RA   Leach J.E., White F.F., Salzberg S.L.;
RT   "Two new complete genome sequences offer insight into host and tissue
RT   specificity of plant pathogenic Xanthomonas spp.";
RL   J. Bacteriol. 193:5450-5464(2011).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CP003057; AEQ96230.1; -; Genomic_DNA.
DR   AlphaFoldDB; G7TCQ3; -.
DR   KEGG; xor:XOC_2085; -.
DR   eggNOG; COG3285; Bacteria.
DR   HOGENOM; CLU_008325_1_3_6; -.
DR   Proteomes; UP000008851; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   NCBIfam; TIGR02778; ligD_pol; 1.
DR   PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR   PANTHER; PTHR42705:SF2; MULTIFUNCTIONAL NON-HOMOLOGOUS END JOINING DNA REPAIR PROTEIN LIGD; 1.
DR   Pfam; PF21686; LigD_Prim-Pol; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}.
FT   DOMAIN          63..311
FT                   /note="DNA ligase D polymerase"
FT                   /evidence="ECO:0000259|Pfam:PF21686"
FT   REGION          1..44
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..30
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   330 AA;  36531 MW;  9633682237A4C167 CRC64;
     MSLSSARRSP KRDGNQSEIR ATQAPTRAAT RATRKSAVAA PAADAMPTLS SPTKLIYPDI
     RATKRDVWDY YHAVMDHLLP QIVGRLLSII RCPSGAVKPC FFQKHHTAGL ERVSSVKLTE
     ETAANAYYLV VEDAPGLLEL VQFNALEFHP WGSHADRPDV ADRVVFDLDP GPDVPFAEVR
     RAANDIRKLL AQVELESFLR VSGGKGLHVV APLNPGCDWK VTKRFAKGFA DALAQAEPQR
     FIATATKRIF VDYLRNGRGA TAVASYSLRG RPGAPVALPL AWSDLSKLQR ADAFTLRDAP
     EKLRRRCKDP WAGMDRIQQN LARWAEQDED
//