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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

ligD

Organism
Xanthomonas oryzae pv. oryzicola (strain BLS256)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciXORY383407:GLMS-2003-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Name:ligDImported
ORF Names:XOC_2085Imported
OrganismiXanthomonas oryzae pv. oryzicola (strain BLS256)Imported
Taxonomic identifieri383407 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000008851 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

G7TCQ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLSSARRSP KRDGNQSEIR ATQAPTRAAT RATRKSAVAA PAADAMPTLS
60 70 80 90 100
SPTKLIYPDI RATKRDVWDY YHAVMDHLLP QIVGRLLSII RCPSGAVKPC
110 120 130 140 150
FFQKHHTAGL ERVSSVKLTE ETAANAYYLV VEDAPGLLEL VQFNALEFHP
160 170 180 190 200
WGSHADRPDV ADRVVFDLDP GPDVPFAEVR RAANDIRKLL AQVELESFLR
210 220 230 240 250
VSGGKGLHVV APLNPGCDWK VTKRFAKGFA DALAQAEPQR FIATATKRIF
260 270 280 290 300
VDYLRNGRGA TAVASYSLRG RPGAPVALPL AWSDLSKLQR ADAFTLRDAP
310 320 330
EKLRRRCKDP WAGMDRIQQN LARWAEQDED
Length:330
Mass (Da):36,531
Last modified:January 25, 2012 - v1
Checksum:i9633682237A4C167
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003057 Genomic DNA. Translation: AEQ96230.1.

Genome annotation databases

EnsemblBacteriaiAEQ96230; AEQ96230; XOC_2085.
KEGGixor:XOC_2085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003057 Genomic DNA. Translation: AEQ96230.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEQ96230; AEQ96230; XOC_2085.
KEGGixor:XOC_2085.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciXORY383407:GLMS-2003-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BLS256Imported.

Entry informationi

Entry nameiG7TCQ3_XANOB
AccessioniPrimary (citable) accession number: G7TCQ3
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: July 22, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.