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Protein

Superoxide dismutase

Gene

sodA

Organism
Escherichia coli (strain 'clone D i2')
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Enzyme and pathway databases

BioCyciECOL885276:GJE7-4480-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:i02_4453Imported
OrganismiEscherichia coli (strain 'clone D i2')Imported
Taxonomic identifieri885276 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000005865: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG7R7R4.
SMRiG7R7R4. Positions 4-208.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G7R7R4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNMSYTLPSL PYAYDALEPH FDKQTMEIHH TKHHQTYVNN ANAALENLPE
60 70 80 90 100
FANLPVEELI TKLDQLPADK KTVLRNNAGG HANHSLFWKG LKKGTTLQGD
110 120 130 140 150
LKAAIERDFG SVDNFKAEFE KAAASRFGSG WAWLVQKGDK LAVVSTANQD
160 170 180 190 200
SPLMGEAISG ASGFPILGLD VWEHAYYLKF QNRRPDYIKE FWNVVNWDEA

AARFAAKK
Length:208
Mass (Da):23,366
Last modified:January 25, 2012 - v1
Checksum:i5AC5CA9B3FDB579A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002211 Genomic DNA. Translation: AER86971.1.
RefSeqiWP_001057409.1. NC_017651.1.
YP_006151595.1. NC_017651.1.

Genome annotation databases

EnsemblBacteriaiAER86971; AER86971; i02_4453.
GeneIDi12672234.
KEGGield:i02_4453.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002211 Genomic DNA. Translation: AER86971.1.
RefSeqiWP_001057409.1. NC_017651.1.
YP_006151595.1. NC_017651.1.

3D structure databases

ProteinModelPortaliG7R7R4.
SMRiG7R7R4. Positions 4-208.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAER86971; AER86971; i02_4453.
GeneIDi12672234.
KEGGield:i02_4453.

Phylogenomic databases

KOiK04564.

Enzyme and pathway databases

BioCyciECOL885276:GJE7-4480-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Rates of mutation and host transmission for an Escherichia coli clone over 3 years."
    Reeves P.R., Liu B., Zhou Z., Li D., Guo D., Ren Y., Clabots C., Lan R., Johnson J.R., Wang L.
    PLoS ONE 6:E26907-E26907(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 'clone D i2'Imported.

Entry informationi

Entry nameiG7R7R4_ECOC2
AccessioniPrimary (citable) accession number: G7R7R4
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: February 4, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.