Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligC

Organism
Mycobacterium bovis BCG str. Mexico
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMBOV717522:GJXR-3838-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligCImported
ORF Names:BCGMEX_3792Imported
OrganismiMycobacterium bovis BCG str. MexicoImported
Taxonomic identifieri717522 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex
ProteomesiUP000005881: Chromosome

Structurei

3D structure databases

ProteinModelPortaliG7QR46.
SMRiG7QR46. Positions 6-340.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G7QR46-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQLPVMPPVS PMLAKSVTAI PPDASYEPKW DGFRSICFRD GDQVELGSRN
60 70 80 90 100
ERPMTRYFPE LVAAIRAELP HRCVIDGEII IATDHGLDFE ALQQRIHPAE
110 120 130 140 150
SRVRMLADRT PASFIAFDLL ALGDDDYTGR PFSERRAALV DAVTGSGADA
160 170 180 190 200
DLSIHVTPAT TDMATAQRWF SEFEGAGLDG VIAKPPHITY QPDKRVMFKI
210 220 230 240 250
KHLRTADCVV AGYRVHKSGS DAIGSLLLGL YQEDGQLASV GVIGAFPMAE
260 270 280 290 300
RRRLLTELQP LVTSFDDHPW NWAAHVAGQR TPRKNEFSRW NVGKDLSFVP
310 320 330 340 350
LRPERVVEVR YDHMEGARFR HTAQFNRWRP DRDPRSCSYA QLERPLTVSL

SDIVPGLR
Length:358
Mass (Da):40,141
Last modified:January 25, 2012 - v1
Checksum:i22DA33D1A56196BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002095 Genomic DNA. Translation: AET21060.1.
RefSeqiYP_005173243.1. NC_016804.1.

Genome annotation databases

EnsemblBacteriaiAET21060; AET21060; BCGMEX_3792.
GeneIDi11812105.
KEGGimbm:BCGMEX_3792.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002095 Genomic DNA. Translation: AET21060.1.
RefSeqiYP_005173243.1. NC_016804.1.

3D structure databases

ProteinModelPortaliG7QR46.
SMRiG7QR46. Positions 6-340.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAET21060; AET21060; BCGMEX_3792.
GeneIDi11812105.
KEGGimbm:BCGMEX_3792.

Enzyme and pathway databases

BioCyciMBOV717522:GJXR-3838-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomic and proteomic analyses of Mycobacterium bovis BCG Mexico 1931 reveal a diverse immunogenic repertoire against tuberculosis infection."
    Orduna P., Cevallos M.A., de Leon S.P., Arvizu A., Hernandez-Gonzalez I.L., Mendoza-Hernandez G., Lopez-Vidal Y.
    BMC Genomics 12:493-493(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MexicoImported.

Entry informationi

Entry nameiG7QR46_MYCBI
AccessioniPrimary (citable) accession number: G7QR46
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: March 4, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.