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G7JD38 (G7JD38_MEDTR) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Xylose isomerase EMBL AES92376.1
Gene names
ORF Names:MTR_4g128840 EMBL AES92376.1
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides) EMBL AES92376.1
Taxonomic identifier3880 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Fabales › Fabaceae › Papilionoideae › Trifolieae › Medicago

Protein attributes

Sequence length478 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylose = D-xylulose. RuleBase RU000609

Sequence similarities

Belongs to the xylose isomerase family. RuleBase RU000609

Sequences

Sequence LengthMass (Da)Tools
G7JD38 [UniParc].

Last modified January 25, 2012. Version 1.
Checksum: 42702744DCEC379A

FASTA47854,002
        10         20         30         40         50         60 
MKSGKLLLLL LSFNVFYYAA VNCAPQTCPA TKDAKCGDSD DWKAEFFPGI SKIKYEGPSS 

        70         80         90        100        110        120 
KNPLSFKWYN PEEEILGKKM KDWFRFSVAF WHTFRGTGVD PFGAPTKYWP WEDGTNSLSM 

       130        140        150        160        170        180 
AKRRMRANFE FINKLGVDFW CFHDRDIAPD GKTIEESNEN LDEVVALAHE LQRQSKKRVL 

       190        200        210        220        230        240 
WGTAQLFVHP RYMHGAATSS ELAVYAYAAA QVKKALEVTH YLGGENYVFW GGREGYQSLL 

       250        260        270        280        290        300 
NTDMERELNH LARFFEAAVA HKKKIGFNGT FLIEPKPQEP TKHQYDWDAA TAANFLRKYG 

       310        320        330        340        350        360 
LIGEFKLNIE CNHATLSGHS CHHELETARI NGLLGNIDAN TGDPQVGWDT DQFLVDIQEA 

       370        380        390        400        410        420 
TMIMLSVIRN GGIAPGGFNF DAKLRRESTD VEDLFIAHIV GMDTMARGLR NAAKLVEDGS 

       430        440        450        460        470 
LAELVRKRYQ SFDTEIGAQI EAGKADFDFL EKKVKEWGEP KVASAKQELA EMIFQNAM

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References

[1]"The Medicago genome provides insight into the evolution of rhizobial symbioses."
Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K., Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S., Krishnakumar V. expand/collapse author list , Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S., Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y., Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.
Nature 0:0-0(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: A17 EMBL AES92376.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM001220 Genomic DNA. Translation: AES92376.1.
RefSeqXP_003610179.1. XM_003610131.1.
UniGeneMtr.8244.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID11445818.
KEGGmtr:MTR_4g128840.

Phylogenomic databases

KOK01805.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. Xyl_isomerase-like_TIM-brl. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameG7JD38_MEDTR
AccessionPrimary (citable) accession number: G7JD38
Entry history
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: May 1, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info