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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

BJ6T_11730

Organism
Bradyrhizobium japonicum USDA 6
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBJAP1037409:GL9L-1172-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:BJ6T_11730Imported
OrganismiBradyrhizobium japonicum USDA 6Imported
Taxonomic identifieri1037409 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000005663 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G7DPB2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAELLDR LAYEPGRNNK LRLITGYFRE VGDPDRGYAL AALTGALSFK
60 70 80 90 100
HAKPALIRDL IASRTDEVLF GLSYDYVGDL SETVALMWPK AAMAAHNNPP
110 120 130 140 150
PPTLTDVVTT LRTLGKTELP KQLERWLDEL DETGRWALLK LVTGALRIGI
160 170 180 190 200
SARLAKTAAA ALGDKDPHEV ELIWPGLSPP YLDLFAWLER RGEKPVNRDP
210 220 230 240 250
APFRPVMLAH AIEDTDFAAL DPADYVAEWK WDGIRVQAVA GRDERGQITA
260 270 280 290 300
RLYSRTGEDI TGSFPDLVPS LRLAGAIDGE LLILREGRVQ SFNVLQQRLN
310 320 330 340 350
RKVVSPKLIK EFPIHLRAYD LLGDDANDLR ELPFAERRER LETFIGKLDD
360 370 380 390 400
PRIDLSPTVP FASWQALTAA RADPASAGAG ADADAVEGVM LKRRDAPYLP
410 420 430 440 450
GRPKGQWWKW KRDPHIIDAV LMYAQRGHGK RSSYYSDYTF GVWTAGEAGD
460 470 480 490 500
ELVPVGKAYF GFTDEELLQI DRFVRRNTTE KFGPVRHVVH ERDKGLVLEV
510 520 530 540 550
AFEGLQRSPR HKSGVAMRFP RISRLRWDKP PREADRLETL ENMLKADESL
560
PTIKVAASAD SH
Length:562
Mass (Da):63,089
Last modified:January 25, 2012 - v1
Checksum:iA07226B97E6F1423
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012206 Genomic DNA. Translation: BAL06464.1.
RefSeqiWP_014491346.1. NZ_AXAV01000013.1.
YP_005606052.1. NC_017249.1.

Genome annotation databases

EnsemblBacteriaiBAL06464; BAL06464; BJ6T_11730.
KEGGibju:BJ6T_11730.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012206 Genomic DNA. Translation: BAL06464.1.
RefSeqiWP_014491346.1. NZ_AXAV01000013.1.
YP_005606052.1. NC_017249.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAL06464; BAL06464; BJ6T_11730.
KEGGibju:BJ6T_11730.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciBJAP1037409:GL9L-1172-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T."
    Kaneko T., Maita S., Hirakawa H., Uchiike N., Minamisawa K., Watanabe A., Sato S.
    Genes (Basel) 2:763-787(2011)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: USDA 6Imported.

Entry informationi

Entry nameiG7DPB2_BRAJP
AccessioniPrimary (citable) accession number: G7DPB2
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: May 27, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.