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Protein
Submitted name:

Uncharacterized protein

Gene

BJ6T_26450

Organism
Bradyrhizobium japonicum USDA 6
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBJAP1037409:GL9L-2642-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:BJ6T_26450Imported
OrganismiBradyrhizobium japonicum USDA 6Imported
Taxonomic identifieri1037409 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000005663 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G7DBZ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRKLSTYRQ KRDFEKTPEP SGKTAVAPSA QRRFVIQKHD ATRLHYDLRL
60 70 80 90 100
EFDGVFKSWA VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPEGQYGGG
110 120 130 140 150
TVMLWDRGTW ESEDPERGFQ KGDLKFTLHG DKLHGSWVLV RMRHDRNGGK
160 170 180 190 200
RTNWLLIKHR DEYASESDDI LSEDKSVASG RAMAEIADGK GRAPKPFMLA
210 220 230 240 250
KGAKAKADAV WQSNRAEEPK GRTVRPAPGA ALKRGTGAKT KATTATNAKK
260 270 280 290 300
VSEMPDFVAP QLCTPVERPP AADGWCHEIK FDGYRVQLRV EDGEATLKTR
310 320 330 340 350
KGLDWTDKFA AIAKEAGELP DVMIDGEIVA LDHNGAPNFS SLQAALSDGK
360 370 380 390 400
TEDLIFFAFD LLFAEGLDCR RLPLGERKDR LRQLLDAGKR KSSQIRYVEH
410 420 430 440 450
FESSGDAVLQ SACKLELEGV VSKKLDAPYR SGRTESWTKA KCRAGHEVVI
460 470 480 490 500
GGWKTTNGKF RSLMAGVHRG DHLAFVGMVG TGFGADTVKR IMPSLKAMEA
510 520 530 540 550
GQSPFGGKNA PKKTRDVHWL KPELVAEIEF AGFTADGNIR QAAFKGLRQD
560 570 580 590 600
KPAEEVEAET PADTELAKPS ARKRAVPSAG KRKDAGTAEV MGVVISKPDK
610 620 630 640 650
ELWPDGGDGE GVTKLDLARY FEAVGAWMIE HIKGRPCSIL RAPDGIGGEK
660 670 680 690 700
FFQRHAMQGT SNLLELAKVS GDRKPYLQID RVEGLAAVAQ IGGVELHPWN
710 720 730 740 750
CAPDAYDTPG RLVFDLDPAP DVKFADVVDA AKEMRQRLSD VGMESFCKTT
760 770 780 790 800
GGKGLHVVVP LLHGARDKVS WKEAKAFAQG VCQWMADDDP ERYLLNMSKK
810 820 830 840 850
LRNGKIFLDY LRNDRLSTAV APLSPRARDG ATVSMPVTWA QVKGDLDPKR
860 870 880
YTVRTVPGLL ARSKAWDGYD DAAISIKAAA KKLAGKKK
Length:888
Mass (Da):97,626
Last modified:January 25, 2012 - v1
Checksum:i9F493359F8288E88
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012206 Genomic DNA. Translation: BAL07923.1.
RefSeqiYP_005607511.1. NC_017249.1.

Genome annotation databases

EnsemblBacteriaiBAL07923; BAL07923; BJ6T_26450.
KEGGibju:BJ6T_26450.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012206 Genomic DNA. Translation: BAL07923.1.
RefSeqiYP_005607511.1. NC_017249.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAL07923; BAL07923; BJ6T_26450.
KEGGibju:BJ6T_26450.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciBJAP1037409:GL9L-2642-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T."
    Kaneko T., Maita S., Hirakawa H., Uchiike N., Minamisawa K., Watanabe A., Sato S.
    Genes (Basel) 2:763-787(2011)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: USDA 6Imported.

Entry informationi

Entry nameiG7DBZ5_BRAJP
AccessioniPrimary (citable) accession number: G7DBZ5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: April 29, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.