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G5YCR0 (G5YCR0_ECOLX) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Exodeoxyribonuclease 7 small subunit HAMAP-Rule MF_00337

EC=3.1.11.6 HAMAP-Rule MF_00337
Alternative name(s):
Exodeoxyribonuclease VII small subunit HAMAP-Rule MF_00337
Gene names
Name:xseB HAMAP-Rule MF_00337
ORF Names:EUOG_00728 EMBL EHF78682.1
OrganismEscherichia coli O104:H4 str. 11-4632 C5 EMBL EHF78682.1
Taxonomic identifier1068621 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length80 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides By similarity. HAMAP-Rule MF_00337 SAAS SAAS003761

Catalytic activity

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_00337

Exonucleolytic cleavage in either 5'- to 3'-or 3'- to 5'-direction to yield nucleoside 5'-phosphates.

Subunit structure

Heterooligomer composed of large and small subunits By similarity. HAMAP-Rule MF_00337 SAAS SAAS003761

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00337 SAAS SAAS003761.

Sequence similarities

Belongs to the XseB family. HAMAP-Rule MF_00337

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Sequences

Sequence LengthMass (Da)Tools
G5YCR0 [UniParc].

Last modified January 25, 2012. Version 1.
Checksum: 8B10380D442CADF4

FASTA808,952
        10         20         30         40         50         60 
MPKKNEAPAS FEKALSELEQ IVTRLESGDL PLEEALNEFE RGVQLARQGQ AKLQQAEQRV 

        70         80 
QILLSDNEDA SLTPFTPDNE 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AFVE01000025 Genomic DNA. Translation: EHF78682.1.

3D structure databases

ProteinModelPortalG5YCR0.
SMRG5YCR0. Positions 8-66.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEHF78682; EHF78682; EUOG_00728.

Phylogenomic databases

OMAAPLNDYK.

Family and domain databases

Gene3D1.10.287.1040. 1 hit.
HAMAPMF_00337. Exonuc_7_S.
InterProIPR003761. Exonuc_VII_S.
[Graphical view]
PfamPF02609. Exonuc_VII_S. 1 hit.
[Graphical view]
PIRSFPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomPD028235. Exonuc_VII_S. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsTIGR01280. xseB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameG5YCR0_ECOLX
AccessionPrimary (citable) accession number: G5YCR0
Entry history
Integrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)