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Protein
Submitted name:

SWI/SNF nucleosome remodeling complex component

Gene

swsn-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: InterPro
  • identical protein binding Source: IntAct

GO - Biological processi

  • ATP-dependent chromatin remodeling Source: InterPro
  • embryo development ending in birth or egg hatching Source: WormBase
  • gonad morphogenesis Source: WormBase
  • hermaphrodite genitalia development Source: WormBase
  • morphogenesis of an epithelium Source: WormBase
  • negative regulation of vulval development Source: WormBase
  • nematode larval development Source: WormBase
  • positive regulation of growth rate Source: WormBase
  • positive regulation of multicellular organism growth Source: WormBase
  • regulation of oviposition Source: WormBase
  • reproduction Source: WormBase

Enzyme and pathway databases

ReactomeiR-CEL-3214858 RMTs methylate histone arginines

Names & Taxonomyi

Protein namesi
Submitted name:
SWI/SNF nucleosome remodeling complex componentImported
Submitted name:
SWI3-like proteinImported
Gene namesi
Name:swsn-1Imported
Synonyms:psa-1Imported
ORF Names:CELE_Y113G7B.23Imported, Y113G7B.23Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiY113G7B.23a ; CE25208 ; WBGene00004203 ; swsn-1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Expressioni

Gene expression databases

BgeeiWBGene00004203
ExpressionAtlasiG5EF87 baseline and differential

Interactioni

Binary interactionsi

Show more details

GO - Molecular functioni

  • identical protein binding Source: IntAct

Protein-protein interaction databases

IntActiG5EF87, 16 interactors
STRINGi6239.Y113G7B.23

Structurei

3D structure databases

SMRiG5EF87
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini83 – 180SWIRMInterPro annotationAdd BLAST98
Domaini252 – 303SANTInterPro annotationAdd BLAST52

Phylogenomic databases

eggNOGiKOG1279 Eukaryota
COG5259 LUCA
GeneTreeiENSGT00390000018166
KOiK11649

Family and domain databases

CDDicd00167 SANT, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR030087 BAF155
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
IPR017884 SANT_dom
IPR032451 SMARCC_C
IPR007526 SWIRM
IPR032448 SWIRM-assoc
IPR036388 WH-like_DNA-bd_sf
PANTHERiPTHR12802:SF9 PTHR12802:SF9, 3 hits
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 1 hit
PF04433 SWIRM, 1 hit
PF16495 SWIRM-assoc_1, 1 hit
PF16498 SWIRM-assoc_3, 1 hit
SMARTiView protein in SMART
SM00717 SANT, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS51293 SANT, 1 hit
PS50934 SWIRM, 1 hit

Sequencei

Sequence statusi: Complete.

G5EF87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKGASKRRR DDDDGDVSMT GDDDDSRSGA AVKVEVPKGK EKDAEFSAPK
60 70 80 90 100
GQKLTDLDEE GVQSTKEAPQ LAEGNVIEQT HYIVVPSYAG WFDYNAIHQI
110 120 130 140 150
EKRAMPEFFN GKNKSKTPDV YVAYRNFMVD TYRLNPFEYV SATACRRNLA
160 170 180 190 200
GDVCSIVRLH SFLEQWGLLN YQVDSDARPA PVAPPPTSHF MVLADTPTGI
210 220 230 240 250
QPMNPPGKES AGASGEPPKE EIKTEIESIS TPGLKIDQYQ KQAIAMRTKG
260 270 280 290 300
APPGRDWTEQ ETCLLLEALE MFKDDWNKVC DHVGTRTQHE CVLKFLQLPI
310 320 330 340 350
QDPYLTENLS SDKAEAAPGG AAKEVLGPLA FQPVPFSQSG NPVMSTVAFL
360 370 380 390 400
ASVVDPQVAA AATKAAMEEF GKLKEEIPPL VAEAHEKNVA AMAEKTGQVD
410 420 430 440 450
GAVGLTKSGL KPAEEAAGDS DEKMDTNTND DVPSTTEAKS AIDKGVQAAA
460 470 480 490 500
ASCLAAAAVK AKHLAQIEER RIKSLVAQLV ETQMKKLEMK LRHFDELEQI
510 520 530 540 550
MDKERESLEY QRHQLILERQ AFHMDQLKYL ENRAKHEAHS RMTSSGALPA
560 570 580 590 600
GLPPGFEVTG PPQPTPQVQI SAQEAAIPEK MDTSEAATAA RPPSTPQAPQ
610 620 630 640 650
APPVQAAPAP VQAPQAPQAP PQAYQGYGGP GGPPQQAYRY PPQQGQQYSP
660 670 680 690 700
YPPPQQQQQH QAQQAQSQAH YGPPGGGQGP PPPPQGQQYY GGPPPPGQPY
710 720 730 740 750
GPPGGYPPQQ QRPPYQAQPY PGPPPPQQQR GYGYPPPPQP GHPYQQPYGQ
760 770 780
MPPPPHGQYQ PQQQQGGPMG PPGGHHEGGD GGDSQQKQE
Length:789
Mass (Da):85,404
Last modified:December 14, 2011 - v1
Checksum:iB259B40DA40E35F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF230279 mRNA Translation: AAG16654.1
BX284605 Genomic DNA Translation: CAB54337.2
PIRiT26449
RefSeqiNP_001256906.1, NM_001269977.1
UniGeneiCel.7072

Genome annotation databases

EnsemblMetazoaiY113G7B.23a; Y113G7B.23a; WBGene00004203
GeneIDi180324
KEGGicel:CELE_Y113G7B.23

Similar proteinsi

Entry informationi

Entry nameiG5EF87_CAEEL
AccessioniPrimary (citable) accession number: G5EF87
Entry historyiIntegrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: May 23, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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