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G5EF87 (G5EF87_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

SWI3-like protein EMBL AAG16654.1
Gene names
Name:swsn-1 WormBase Y113G7B.23a EMBL CAB54337.2
Synonyms:psa-1 EMBL AAG16654.1
ORF Names:CELE_Y113G7B.23 EMBL CAB54337.2, Y113G7B.23 WormBase Y113G7B.23a
OrganismCaenorhabditis elegans [Reference proteome] EMBL CAB54337.2
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length789 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequences

Sequence LengthMass (Da)Tools
G5EF87 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: B259B40DA40E35F8

FASTA78985,404
        10         20         30         40         50         60 
MKKGASKRRR DDDDGDVSMT GDDDDSRSGA AVKVEVPKGK EKDAEFSAPK GQKLTDLDEE 

        70         80         90        100        110        120 
GVQSTKEAPQ LAEGNVIEQT HYIVVPSYAG WFDYNAIHQI EKRAMPEFFN GKNKSKTPDV 

       130        140        150        160        170        180 
YVAYRNFMVD TYRLNPFEYV SATACRRNLA GDVCSIVRLH SFLEQWGLLN YQVDSDARPA 

       190        200        210        220        230        240 
PVAPPPTSHF MVLADTPTGI QPMNPPGKES AGASGEPPKE EIKTEIESIS TPGLKIDQYQ 

       250        260        270        280        290        300 
KQAIAMRTKG APPGRDWTEQ ETCLLLEALE MFKDDWNKVC DHVGTRTQHE CVLKFLQLPI 

       310        320        330        340        350        360 
QDPYLTENLS SDKAEAAPGG AAKEVLGPLA FQPVPFSQSG NPVMSTVAFL ASVVDPQVAA 

       370        380        390        400        410        420 
AATKAAMEEF GKLKEEIPPL VAEAHEKNVA AMAEKTGQVD GAVGLTKSGL KPAEEAAGDS 

       430        440        450        460        470        480 
DEKMDTNTND DVPSTTEAKS AIDKGVQAAA ASCLAAAAVK AKHLAQIEER RIKSLVAQLV 

       490        500        510        520        530        540 
ETQMKKLEMK LRHFDELEQI MDKERESLEY QRHQLILERQ AFHMDQLKYL ENRAKHEAHS 

       550        560        570        580        590        600 
RMTSSGALPA GLPPGFEVTG PPQPTPQVQI SAQEAAIPEK MDTSEAATAA RPPSTPQAPQ 

       610        620        630        640        650        660 
APPVQAAPAP VQAPQAPQAP PQAYQGYGGP GGPPQQAYRY PPQQGQQYSP YPPPQQQQQH 

       670        680        690        700        710        720 
QAQQAQSQAH YGPPGGGQGP PPPPQGQQYY GGPPPPGQPY GPPGGYPPQQ QRPPYQAQPY 

       730        740        750        760        770        780 
PGPPPPQQQR GYGYPPPPQP GHPYQQPYGQ MPPPPHGQYQ PQQQQGGPMG PPGGHHEGGD 


GGDSQQKQE 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
[2]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
Caenorhabditis elegans Sequencing Consortium
Science 282:2012-2018(1998)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CAB54337.2.
[3]WormBase Consortium
Lennard N.
Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CAB54337.2.
[4]"Components of the SWI/SNF complex are required for asymmetric cell division in C. elegans."
Sawa H., Kouike H., Okano H.
Mol. Cell 6:617-624(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF230279 mRNA. Translation: AAG16654.1.
AL110477 Genomic DNA. Translation: CAB54337.2.
PIRT26449.
RefSeqNP_001256906.1. NM_001269977.1.
UniGeneCel.7072.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaY113G7B.23a; Y113G7B.23a; Y113G7B.23.
GeneID180324.
KEGGcel:CELE_Y113G7B.23.

Organism-specific databases

CTD180324.
WormBaseY113G7B.23a; CE25208; WBGene00004203; swsn-1.

Phylogenomic databases

KOK11649.
OMAQMKKLEM.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
1.10.10.60. 1 hit.
InterProIPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007526. SWIRM.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00249. Myb_DNA-binding. 1 hit.
PF04433. SWIRM. 1 hit.
[Graphical view]
SMARTSM00717. SANT. 1 hit.
[Graphical view]
SUPFAMSSF46689. SSF46689. 2 hits.
PROSITEPS51293. SANT. 1 hit.
PS50934. SWIRM. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio908892.

Entry information

Entry nameG5EF87_CAEEL
AccessionPrimary (citable) accession number: G5EF87
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: April 16, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)