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G5EF87

- G5EF87_CAEEL

UniProt

G5EF87 - G5EF87_CAEEL

Protein
Submitted name:

Protein SWSN-1, isoform a

Gene

swsn-1

Organism
Caenorhabditis elegans
Status
Unreviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 30 (01 Oct 2014)
      Sequence version 1 (14 Dec 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. chromatin binding Source: InterPro
    2. DNA binding Source: InterPro
    3. identical protein binding Source: IntAct
    4. protein binding Source: IntAct

    GO - Biological processi

    1. embryo development ending in birth or egg hatching Source: WormBase
    2. gonad morphogenesis Source: WormBase
    3. hermaphrodite genitalia development Source: WormBase
    4. morphogenesis of an epithelium Source: WormBase
    5. negative regulation of vulval development Source: WormBase
    6. nematode larval development Source: WormBase
    7. positive regulation of growth rate Source: WormBase
    8. positive regulation of multicellular organism growth Source: WormBase
    9. regulation of oviposition Source: WormBase
    10. reproduction Source: WormBase

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein SWSN-1, isoform aImported
    Submitted name:
    SWI3-like proteinImported
    Gene namesi
    Name:swsn-1Imported
    Synonyms:psa-1Imported
    ORF Names:CELE_Y113G7B.23Imported, Y113G7B.23Imported
    OrganismiCaenorhabditis elegansImported
    Taxonomic identifieri6239 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
    ProteomesiUP000001940: Chromosome V

    Organism-specific databases

    WormBaseiY113G7B.23a; CE25208; WBGene00004203; swsn-1.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-KW

    Keywords - Cellular componenti

    NucleusSAAS annotation

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000018166.
    KOiK11649.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    1.10.10.60. 1 hit.
    InterProiIPR009057. Homeodomain-like.
    IPR001005. SANT/Myb.
    IPR017884. SANT_dom.
    IPR007526. SWIRM.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00249. Myb_DNA-binding. 1 hit.
    PF04433. SWIRM. 1 hit.
    [Graphical view]
    SMARTiSM00717. SANT. 1 hit.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 2 hits.
    PROSITEiPS51293. SANT. 1 hit.
    PS50934. SWIRM. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    G5EF87-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKKGASKRRR DDDDGDVSMT GDDDDSRSGA AVKVEVPKGK EKDAEFSAPK    50
    GQKLTDLDEE GVQSTKEAPQ LAEGNVIEQT HYIVVPSYAG WFDYNAIHQI 100
    EKRAMPEFFN GKNKSKTPDV YVAYRNFMVD TYRLNPFEYV SATACRRNLA 150
    GDVCSIVRLH SFLEQWGLLN YQVDSDARPA PVAPPPTSHF MVLADTPTGI 200
    QPMNPPGKES AGASGEPPKE EIKTEIESIS TPGLKIDQYQ KQAIAMRTKG 250
    APPGRDWTEQ ETCLLLEALE MFKDDWNKVC DHVGTRTQHE CVLKFLQLPI 300
    QDPYLTENLS SDKAEAAPGG AAKEVLGPLA FQPVPFSQSG NPVMSTVAFL 350
    ASVVDPQVAA AATKAAMEEF GKLKEEIPPL VAEAHEKNVA AMAEKTGQVD 400
    GAVGLTKSGL KPAEEAAGDS DEKMDTNTND DVPSTTEAKS AIDKGVQAAA 450
    ASCLAAAAVK AKHLAQIEER RIKSLVAQLV ETQMKKLEMK LRHFDELEQI 500
    MDKERESLEY QRHQLILERQ AFHMDQLKYL ENRAKHEAHS RMTSSGALPA 550
    GLPPGFEVTG PPQPTPQVQI SAQEAAIPEK MDTSEAATAA RPPSTPQAPQ 600
    APPVQAAPAP VQAPQAPQAP PQAYQGYGGP GGPPQQAYRY PPQQGQQYSP 650
    YPPPQQQQQH QAQQAQSQAH YGPPGGGQGP PPPPQGQQYY GGPPPPGQPY 700
    GPPGGYPPQQ QRPPYQAQPY PGPPPPQQQR GYGYPPPPQP GHPYQQPYGQ 750
    MPPPPHGQYQ PQQQQGGPMG PPGGHHEGGD GGDSQQKQE 789
    Length:789
    Mass (Da):85,404
    Last modified:December 14, 2011 - v1
    Checksum:iB259B40DA40E35F8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF230279 mRNA. Translation: AAG16654.1.
    AL110477 Genomic DNA. Translation: CAB54337.2.
    PIRiT26449.
    RefSeqiNP_001256906.1. NM_001269977.1.
    UniGeneiCel.7072.

    Genome annotation databases

    EnsemblMetazoaiY113G7B.23a; Y113G7B.23a; WBGene00004203.
    GeneIDi180324.
    KEGGicel:CELE_Y113G7B.23.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF230279 mRNA. Translation: AAG16654.1 .
    AL110477 Genomic DNA. Translation: CAB54337.2 .
    PIRi T26449.
    RefSeqi NP_001256906.1. NM_001269977.1.
    UniGenei Cel.7072.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai Y113G7B.23a ; Y113G7B.23a ; WBGene00004203 .
    GeneIDi 180324.
    KEGGi cel:CELE_Y113G7B.23.

    Organism-specific databases

    CTDi 180324.
    WormBasei Y113G7B.23a ; CE25208 ; WBGene00004203 ; swsn-1.

    Phylogenomic databases

    GeneTreei ENSGT00390000018166.
    KOi K11649.

    Miscellaneous databases

    NextBioi 908892.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    1.10.10.60. 1 hit.
    InterProi IPR009057. Homeodomain-like.
    IPR001005. SANT/Myb.
    IPR017884. SANT_dom.
    IPR007526. SWIRM.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00249. Myb_DNA-binding. 1 hit.
    PF04433. SWIRM. 1 hit.
    [Graphical view ]
    SMARTi SM00717. SANT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 2 hits.
    PROSITEi PS51293. SANT. 1 hit.
    PS50934. SWIRM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
      Caenorhabditis elegans Sequencing Consortium
      Science 282:2012-2018(1998)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Bristol N2Imported.
    2. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
      The C. elegans sequencing consortium
      Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Bristol N2Imported.
    3. WormBase Consortium
      Lennard N.
      Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Bristol N2Imported.
    4. "Components of the SWI/SNF complex are required for asymmetric cell division in C. elegans."
      Sawa H., Kouike H., Okano H.
      Mol. Cell 6:617-624(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiG5EF87_CAEEL
    AccessioniPrimary (citable) accession number: G5EF87
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 14, 2011
    Last sequence update: December 14, 2011
    Last modified: October 1, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3