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Protein
Submitted name:

Protein SWSN-1, isoform a

Gene

swsn-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. chromatin binding Source: InterPro
  2. DNA binding Source: InterPro
  3. identical protein binding Source: IntAct

GO - Biological processi

  1. embryo development ending in birth or egg hatching Source: WormBase
  2. gonad morphogenesis Source: WormBase
  3. hermaphrodite genitalia development Source: WormBase
  4. morphogenesis of an epithelium Source: WormBase
  5. negative regulation of vulval development Source: WormBase
  6. nematode larval development Source: WormBase
  7. positive regulation of growth rate Source: WormBase
  8. positive regulation of multicellular organism growth Source: WormBase
  9. regulation of oviposition Source: WormBase
  10. reproduction Source: WormBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein SWSN-1, isoform aImported
Submitted name:
SWI3-like proteinImported
Gene namesi
Name:swsn-1Imported
Synonyms:psa-1Imported
ORF Names:CELE_Y113G7B.23Imported, Y113G7B.23Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940: Chromosome V

Organism-specific databases

WormBaseiY113G7B.23a; CE25208; WBGene00004203; swsn-1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliG5EF87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000018166.
KOiK11649.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007526. SWIRM.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00249. Myb_DNA-binding. 1 hit.
PF04433. SWIRM. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS51293. SANT. 1 hit.
PS50934. SWIRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G5EF87-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKKGASKRRR DDDDGDVSMT GDDDDSRSGA AVKVEVPKGK EKDAEFSAPK
60 70 80 90 100
GQKLTDLDEE GVQSTKEAPQ LAEGNVIEQT HYIVVPSYAG WFDYNAIHQI
110 120 130 140 150
EKRAMPEFFN GKNKSKTPDV YVAYRNFMVD TYRLNPFEYV SATACRRNLA
160 170 180 190 200
GDVCSIVRLH SFLEQWGLLN YQVDSDARPA PVAPPPTSHF MVLADTPTGI
210 220 230 240 250
QPMNPPGKES AGASGEPPKE EIKTEIESIS TPGLKIDQYQ KQAIAMRTKG
260 270 280 290 300
APPGRDWTEQ ETCLLLEALE MFKDDWNKVC DHVGTRTQHE CVLKFLQLPI
310 320 330 340 350
QDPYLTENLS SDKAEAAPGG AAKEVLGPLA FQPVPFSQSG NPVMSTVAFL
360 370 380 390 400
ASVVDPQVAA AATKAAMEEF GKLKEEIPPL VAEAHEKNVA AMAEKTGQVD
410 420 430 440 450
GAVGLTKSGL KPAEEAAGDS DEKMDTNTND DVPSTTEAKS AIDKGVQAAA
460 470 480 490 500
ASCLAAAAVK AKHLAQIEER RIKSLVAQLV ETQMKKLEMK LRHFDELEQI
510 520 530 540 550
MDKERESLEY QRHQLILERQ AFHMDQLKYL ENRAKHEAHS RMTSSGALPA
560 570 580 590 600
GLPPGFEVTG PPQPTPQVQI SAQEAAIPEK MDTSEAATAA RPPSTPQAPQ
610 620 630 640 650
APPVQAAPAP VQAPQAPQAP PQAYQGYGGP GGPPQQAYRY PPQQGQQYSP
660 670 680 690 700
YPPPQQQQQH QAQQAQSQAH YGPPGGGQGP PPPPQGQQYY GGPPPPGQPY
710 720 730 740 750
GPPGGYPPQQ QRPPYQAQPY PGPPPPQQQR GYGYPPPPQP GHPYQQPYGQ
760 770 780
MPPPPHGQYQ PQQQQGGPMG PPGGHHEGGD GGDSQQKQE
Length:789
Mass (Da):85,404
Last modified:December 14, 2011 - v1
Checksum:iB259B40DA40E35F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF230279 mRNA. Translation: AAG16654.1.
AL110477 Genomic DNA. Translation: CAB54337.2.
PIRiT26449.
RefSeqiNP_001256906.1. NM_001269977.1.
UniGeneiCel.7072.

Genome annotation databases

EnsemblMetazoaiY113G7B.23a; Y113G7B.23a; WBGene00004203.
GeneIDi180324.
KEGGicel:CELE_Y113G7B.23.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF230279 mRNA. Translation: AAG16654.1.
AL110477 Genomic DNA. Translation: CAB54337.2.
PIRiT26449.
RefSeqiNP_001256906.1. NM_001269977.1.
UniGeneiCel.7072.

3D structure databases

ProteinModelPortaliG5EF87.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY113G7B.23a; Y113G7B.23a; WBGene00004203.
GeneIDi180324.
KEGGicel:CELE_Y113G7B.23.

Organism-specific databases

CTDi180324.
WormBaseiY113G7B.23a; CE25208; WBGene00004203; swsn-1.

Phylogenomic databases

GeneTreeiENSGT00390000018166.
KOiK11649.

Miscellaneous databases

NextBioi908892.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007526. SWIRM.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00249. Myb_DNA-binding. 1 hit.
PF04433. SWIRM. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS51293. SANT. 1 hit.
PS50934. SWIRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.
  2. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Science 282:2012-2018(1998)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Bristol N2Imported.
  3. WormBase Consortium
    Lennard N.
    Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Bristol N2Imported.
  4. "Components of the SWI/SNF complex are required for asymmetric cell division in C. elegans."
    Sawa H., Kouike H., Okano H.
    Mol. Cell 6:617-624(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiG5EF87_CAEEL
AccessioniPrimary (citable) accession number: G5EF87
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: February 4, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.