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G5EF87

- G5EF87_CAEEL

UniProt

G5EF87 - G5EF87_CAEEL

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Protein
Submitted name: Protein SWSN-1, isoform a
Gene
swsn-1, psa-1, CELE_Y113G7B.23, Y113G7B.23
Organism
Caenorhabditis elegans
Status
Unreviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. chromatin binding Source: InterPro
  3. identical protein binding Source: IntAct
  4. protein binding Source: IntAct

GO - Biological processi

  1. embryo development ending in birth or egg hatching Source: WormBase
  2. gonad morphogenesis Source: WormBase
  3. hermaphrodite genitalia development Source: WormBase
  4. morphogenesis of an epithelium Source: WormBase
  5. negative regulation of vulval development Source: WormBase
  6. nematode larval development Source: WormBase
  7. positive regulation of growth rate Source: WormBase
  8. positive regulation of multicellular organism growth Source: WormBase
  9. regulation of oviposition Source: WormBase
  10. reproduction Source: WormBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein SWSN-1, isoform aImported
Submitted name:
SWI3-like proteinImported
Gene namesi
Name:swsn-1Imported
Synonyms:psa-1Imported
ORF Names:CELE_Y113G7B.23Imported, Y113G7B.23Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940: Chromosome V

Organism-specific databases

WormBaseiY113G7B.23a; CE25208; WBGene00004203; swsn-1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotations

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000018166.
KOiK11649.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007526. SWIRM.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00249. Myb_DNA-binding. 1 hit.
PF04433. SWIRM. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS51293. SANT. 1 hit.
PS50934. SWIRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

G5EF87-1 [UniParc]FASTAAdd to Basket

« Hide

MKKGASKRRR DDDDGDVSMT GDDDDSRSGA AVKVEVPKGK EKDAEFSAPK    50
GQKLTDLDEE GVQSTKEAPQ LAEGNVIEQT HYIVVPSYAG WFDYNAIHQI 100
EKRAMPEFFN GKNKSKTPDV YVAYRNFMVD TYRLNPFEYV SATACRRNLA 150
GDVCSIVRLH SFLEQWGLLN YQVDSDARPA PVAPPPTSHF MVLADTPTGI 200
QPMNPPGKES AGASGEPPKE EIKTEIESIS TPGLKIDQYQ KQAIAMRTKG 250
APPGRDWTEQ ETCLLLEALE MFKDDWNKVC DHVGTRTQHE CVLKFLQLPI 300
QDPYLTENLS SDKAEAAPGG AAKEVLGPLA FQPVPFSQSG NPVMSTVAFL 350
ASVVDPQVAA AATKAAMEEF GKLKEEIPPL VAEAHEKNVA AMAEKTGQVD 400
GAVGLTKSGL KPAEEAAGDS DEKMDTNTND DVPSTTEAKS AIDKGVQAAA 450
ASCLAAAAVK AKHLAQIEER RIKSLVAQLV ETQMKKLEMK LRHFDELEQI 500
MDKERESLEY QRHQLILERQ AFHMDQLKYL ENRAKHEAHS RMTSSGALPA 550
GLPPGFEVTG PPQPTPQVQI SAQEAAIPEK MDTSEAATAA RPPSTPQAPQ 600
APPVQAAPAP VQAPQAPQAP PQAYQGYGGP GGPPQQAYRY PPQQGQQYSP 650
YPPPQQQQQH QAQQAQSQAH YGPPGGGQGP PPPPQGQQYY GGPPPPGQPY 700
GPPGGYPPQQ QRPPYQAQPY PGPPPPQQQR GYGYPPPPQP GHPYQQPYGQ 750
MPPPPHGQYQ PQQQQGGPMG PPGGHHEGGD GGDSQQKQE 789
Length:789
Mass (Da):85,404
Last modified:December 14, 2011 - v1
Checksum:iB259B40DA40E35F8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF230279 mRNA. Translation: AAG16654.1.
AL110477 Genomic DNA. Translation: CAB54337.2.
PIRiT26449.
RefSeqiNP_001256906.1. NM_001269977.1.
UniGeneiCel.7072.

Genome annotation databases

EnsemblMetazoaiY113G7B.23a; Y113G7B.23a; WBGene00004203.
GeneIDi180324.
KEGGicel:CELE_Y113G7B.23.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF230279 mRNA. Translation: AAG16654.1 .
AL110477 Genomic DNA. Translation: CAB54337.2 .
PIRi T26449.
RefSeqi NP_001256906.1. NM_001269977.1.
UniGenei Cel.7072.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai Y113G7B.23a ; Y113G7B.23a ; WBGene00004203 .
GeneIDi 180324.
KEGGi cel:CELE_Y113G7B.23.

Organism-specific databases

CTDi 180324.
WormBasei Y113G7B.23a ; CE25208 ; WBGene00004203 ; swsn-1.

Phylogenomic databases

GeneTreei ENSGT00390000018166.
KOi K11649.

Miscellaneous databases

NextBioi 908892.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
1.10.10.60. 1 hit.
InterProi IPR009057. Homeodomain-like.
IPR001005. SANT/Myb.
IPR017884. SANT_dom.
IPR007526. SWIRM.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00249. Myb_DNA-binding. 1 hit.
PF04433. SWIRM. 1 hit.
[Graphical view ]
SMARTi SM00717. SANT. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 2 hits.
PROSITEi PS51293. SANT. 1 hit.
PS50934. SWIRM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Science 282:2012-2018(1998)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Bristol N2Imported.
  2. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.
  3. WormBase Consortium
    Lennard N.
    Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Bristol N2Imported.
  4. "Components of the SWI/SNF complex are required for asymmetric cell division in C. elegans."
    Sawa H., Kouike H., Okano H.
    Mol. Cell 6:617-624(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiG5EF87_CAEEL
AccessioniPrimary (citable) accession number: G5EF87
Entry historyi
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: September 3, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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