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Protein
Submitted name:

SMG-7

Gene

smg-7

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
SMG-7Imported
Submitted name:
Suppressor with Morphological effect on GenitaliaImported
Gene namesi
Name:smg-7Imported
ORF Names:CELE_Y73B6A.4Imported, Y73B6A.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiY73B6A.4 ; CE25584 ; WBGene00004885 ; smg-7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiWBGene00004885

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
smg-5G5ECF14EBI-6919756,EBI-6919737

Protein-protein interaction databases

IntActiG5EF47, 1 interactor
STRINGi6239.Y73B6A.4

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ZHEX-ray3.00B/D1-395[»]
SMRiG5EF47
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini130 – 163TPR_REGIONInterPro annotationAdd BLAST34
Repeati130 – 163TPRPROSITE-ProRule annotationAdd BLAST34

Keywords - Domaini

TPR repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG2162 Eukaryota
ENOG410XR9Z LUCA
KOiK14409
OMAiFETSMSK
OrthoDBiEOG091G0FLI

Family and domain databases

Gene3Di1.25.40.10, 1 hit
InterProiView protein in InterPro
IPR018834 DNA/RNA-bd_Est1-type
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR019734 TPR_repeat
PfamiView protein in Pfam
PF10373 EST1_DNA_bind, 1 hit
SUPFAMiSSF48452 SSF48452, 1 hit
PROSITEiView protein in PROSITE
PS50005 TPR, 1 hit
PS50293 TPR_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

G5EF47-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDEWEQLTV ELRKIPRGTE AAPQYLRHLM KMFVADFETA VSKRFDVKFW
60 70 80 90 100
NKLKSMMDEI TKAMENDRLV NHNVQNLAIG FLTDLSLLVH YHYEIPNYGN
110 120 130 140 150
DISKQLTWTP DVFLNRKPIK SKKNSRVFMA YVLLRMGDLM RYKENYPKAQ
160 170 180 190 200
EYYEQSCRIN PADGAVWNQL GLISSLGAKN LESVYFHTRA LHATMEFPTA
210 220 230 240 250
SGGLTNIFKN FANRDISRPM PIKDLYLSCL GRIHFLLEIE DSSVHLQKIG
260 270 280 290 300
EEAATSKEMI VPLMSVYKHL EDGTELEQRA VEYVKTIWCT AYRSLLKTLD
310 320 330 340 350
DYKEESKKLA DVPHLLHILA LLLCAPKLLR GIEDQTEDEV TSICEWLLCA
360 370 380 390 400
NCDEKIKDSD AFGYFHCLQR IQYPLTRTQL AQKLVEIEDE DESKDSDQST
410 420 430 440 450
IPEEDQKSLS TDTSRIQNED SEPESESESS DEEVLQRGRR RGRNPNLDES

VETDEDEF
Length:458
Mass (Da):53,006
Last modified:December 14, 2011 - v1
Checksum:iAD7B83B041B80E47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF089729 mRNA Translation: AAD04156.1
BX284604 Genomic DNA Translation: CCD62342.1
PIRiT43643
RefSeqiNP_501033.1, NM_068632.4
UniGeneiCel.19545

Genome annotation databases

EnsemblMetazoaiY73B6A.4; Y73B6A.4; WBGene00004885
GeneIDi177435
KEGGicel:CELE_Y73B6A.4

Similar proteinsi

Entry informationi

Entry nameiG5EF47_CAEEL
AccessioniPrimary (citable) accession number: G5EF47
Entry historyiIntegrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: May 23, 2018
This is version 64 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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