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G5EF47 (G5EF47_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

SMG-7 EMBL AAD04156.1
Gene names
Name:smg-7 WormBase Y73B6A.4 EMBL CCD62342.1
ORF Names:CELE_Y73B6A.4 EMBL CCD62342.1, Y73B6A.4 WormBase Y73B6A.4
OrganismCaenorhabditis elegans [Reference proteome] EMBL AAD04156.1
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length458 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequences

Sequence LengthMass (Da)Tools
G5EF47 [UniParc].

Last modified December 14, 2011. Version 1.
Checksum: AD7B83B041B80E47

FASTA45853,006
        10         20         30         40         50         60 
MSDEWEQLTV ELRKIPRGTE AAPQYLRHLM KMFVADFETA VSKRFDVKFW NKLKSMMDEI 

        70         80         90        100        110        120 
TKAMENDRLV NHNVQNLAIG FLTDLSLLVH YHYEIPNYGN DISKQLTWTP DVFLNRKPIK 

       130        140        150        160        170        180 
SKKNSRVFMA YVLLRMGDLM RYKENYPKAQ EYYEQSCRIN PADGAVWNQL GLISSLGAKN 

       190        200        210        220        230        240 
LESVYFHTRA LHATMEFPTA SGGLTNIFKN FANRDISRPM PIKDLYLSCL GRIHFLLEIE 

       250        260        270        280        290        300 
DSSVHLQKIG EEAATSKEMI VPLMSVYKHL EDGTELEQRA VEYVKTIWCT AYRSLLKTLD 

       310        320        330        340        350        360 
DYKEESKKLA DVPHLLHILA LLLCAPKLLR GIEDQTEDEV TSICEWLLCA NCDEKIKDSD 

       370        380        390        400        410        420 
AFGYFHCLQR IQYPLTRTQL AQKLVEIEDE DESKDSDQST IPEEDQKSLS TDTSRIQNED 

       430        440        450 
SEPESESESS DEEVLQRGRR RGRNPNLDES VETDEDEF 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
[2]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
Caenorhabditis elegans Sequencing Consortium
Science 282:2012-2018(1998)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CCD62342.1.
[3]Cali B.C., Latham J.R., Kuchma S., Anderson R.P.
Submitted (SEP-1998) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: N2 EMBL AAD04156.1.
[4]"smg-7 is required for mRNA surveillance in Caenorhabditis elegans."
Cali B.M., Kuchma S.L., Latham J., Anderson P.
Genetics 151:605-616(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: N2 EMBL AAD04156.1.
[5]WormBase Consortium
Becker M., Graves T., Shafer S.
Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Bristol N2 EMBL CCD62342.1.
[6]"An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay."
Jonas S., Weichenrieder O., Izaurralde E.
Genes Dev. 27:211-225(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS) OF 1-395.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF089729 mRNA. Translation: AAD04156.1.
FO080249 Genomic DNA. Translation: CCD62342.1.
PIRT43643.
RefSeqNP_501033.1. NM_068632.4.
UniGeneCel.19545.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZHEX-ray3.00B/D1-395[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaY73B6A.4; Y73B6A.4; WBGene00004885.
GeneID177435.
KEGGcel:CELE_Y73B6A.4.

Organism-specific databases

CTD177435.
WormBaseY73B6A.4; CE25584; WBGene00004885; smg-7.

Phylogenomic databases

KOK14409.
OMADESVETD.
OrthoDBEOG708VZ1.

Family and domain databases

Gene3D1.25.40.10. 1 hit.
InterProIPR018834. DNA/RNA-bd_Est1-type.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR019734. TPR_repeat.
[Graphical view]
PfamPF10373. EST1_DNA_bind. 1 hit.
[Graphical view]
PROSITEPS50005. TPR. 1 hit.
PS50293. TPR_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio896806.

Entry information

Entry nameG5EF47_CAEEL
AccessionPrimary (citable) accession number: G5EF47
Entry history
Integrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: June 11, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)